Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A06
         (324 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    26   0.099
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   3.7  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    21   4.9  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   4.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   4.9  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    21   4.9  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    21   4.9  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    21   4.9  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    21   4.9  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    21   4.9  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    21   4.9  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    21   4.9  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    21   4.9  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    21   4.9  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    21   4.9  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    20   8.6  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 26.2 bits (55), Expect = 0.099
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 110 LKTTMFQYQGSDAYNCTHYSKRYYAIDSVTRVLDV 6
           LKT M  + G   Y+C+H  +++  + ++ R L V
Sbjct: 25  LKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRV 59


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 71  YNCTHYSKRYYAIDSVTRV 15
           YN  +Y K YY I+ + ++
Sbjct: 318 YNNNNYKKLYYNINYIEQI 336


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 71  YNCTHYSKRYYAIDSVTRV 15
           YN  +Y+K YY I+ + ++
Sbjct: 101 YNKHNYNKLYYNINYIEQI 119


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 65  CTHYSKRYYAIDSVTRV 15
           C +Y K YY I+ + ++
Sbjct: 101 CNNYKKLYYNINYIEQI 117


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 65  CTHYSKRYYAIDSVTRV 15
           C +Y K YY I+ + ++
Sbjct: 101 CNNYKKLYYNINYIEQI 117


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 71  YNCTHYSKRYYAIDSVTRV 15
           YN  +Y+K YY I+ + ++
Sbjct: 101 YNKHNYNKLYYNINYIEQI 119


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 71  YNCTHYSKRYYAIDSVTRV 15
           YN  +Y+K YY I+ + ++
Sbjct: 101 YNKHNYNKLYYNINYIEQI 119


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 71  YNCTHYSKRYYAIDSVTRV 15
           YN  +Y+K YY I+ + ++
Sbjct: 101 YNKHNYNKLYYNINYIEQI 119


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 71  YNCTHYSKRYYAIDSVTRV 15
           YN  +Y+K YY I+ + ++
Sbjct: 101 YNKHNYNKLYYNINYIEQI 119


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 71  YNCTHYSKRYYAIDSVTRV 15
           YN  +Y+K YY I+ + ++
Sbjct: 101 YNKHNYNKLYYNINYIEQI 119


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 71  YNCTHYSKRYYAIDSVTRV 15
           YN  +Y+K YY I+ + ++
Sbjct: 101 YNKHNYNKLYYNINYIEQI 119


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 71  YNCTHYSKRYYAIDSVTRV 15
           YN  +Y+K YY I+ + ++
Sbjct: 101 YNKHNYNKLYYNINYIEQI 119


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 71  YNCTHYSKRYYAIDSVTRV 15
           YN  +Y+K YY I+ + ++
Sbjct: 101 YNKHNYNKLYYNINYIEQI 119


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 71  YNCTHYSKRYYAIDSVTRV 15
           YN  +Y+K YY I+ + ++
Sbjct: 334 YNKHNYNKLYYNINYIEQI 352


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 71  YNCTHYSKRYYAIDSVTRV 15
           YN  +Y+K YY I+ + ++
Sbjct: 334 YNKHNYNKLYYNINYIEQI 352


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 23  SHYQ*RNNVWNNVCNYKH 76
           S+Y   NN +NN  NY +
Sbjct: 325 SNYNNYNNNYNNYNNYNN 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,024
Number of Sequences: 438
Number of extensions: 1030
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)