Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A04
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual           99   6e-22
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   1.8  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    26   4.1  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    26   5.4  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   7.2  

>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 312

 Score = 98.7 bits (235), Expect = 6e-22
 Identities = 52/129 (40%), Positives = 80/129 (62%), Gaps = 6/129 (4%)
 Frame = +2

Query: 281 KYIDIGANLTDDMYKGVYNGSRKHEPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELS 460
           ++ DIG N TD +++G+Y+   KH  D D ++ RA   G+ K+++TG ++E+S++A+ L+
Sbjct: 13  RFYDIGYNATDPVFRGIYHEKLKHPDDFDSIISRAKAVGVEKMMITGDNVENSEEALNLA 72

Query: 461 RTDSKLFT-TVGCHPTRCSEFL---SNPDDYLQGLRDLISGNK--DKVVAIGECGLXYER 622
            T+ + FT TVG HP +   FL     P+DYL  L  L +  K   KVVA GE GL Y+R
Sbjct: 73  -TNYECFTSTVGVHPCQAQCFLRHSEGPEDYLVKLEALANKGKASGKVVAFGEFGLDYDR 131

Query: 623 FHFCEKEVQ 649
            H+   +VQ
Sbjct: 132 LHYAPADVQ 140


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 525 DRNSLHLVG*H-PTVVNNLESVLESSIAFLLSSRLPPVTMILL 400
           D ++ HL+  H PT++  LE  LE  + FL  SRL   +++ L
Sbjct: 812 DEDNSHLLVHHIPTIIRKLEQ-LEQIVRFLKGSRLYASSLLFL 853


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 109 LKCCFKLYTLHISEHYDQFNEQ 174
           L CCF+ +    S+HY ++ EQ
Sbjct: 322 LACCFESHFFAFSQHYPRYLEQ 343


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -1

Query: 64  INNNDMAVCNALAH 23
           +NNN+M++ NALAH
Sbjct: 709 VNNNNMSIQNALAH 722


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 305 LTDDMYKGVYNGSRKHEPDLD 367
           L  D Y+ +YN    HEPDL+
Sbjct: 27  LRADNYEEIYNSLVHHEPDLE 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,254
Number of Sequences: 5004
Number of extensions: 47143
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)