Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_A04
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0409 + 3143838-3144017,3144345-3144461,3144659-3144739,314... 61 9e-10
07_01_0412 + 3151059-3151090,3151374-3151833,3151899-3151979,315... 46 3e-05
11_01_0131 + 1086916-1088127,1088213-1089469 28 7.4
04_04_1619 - 34825922-34825998,34826109-34826200,34827281-348273... 28 7.4
04_04_1617 - 34815889-34816080,34816185-34816412,34816591-348168... 28 7.4
05_03_0558 + 15454552-15454746,15456700-15457134 27 9.8
02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263 27 9.8
>07_01_0409 +
3143838-3144017,3144345-3144461,3144659-3144739,
3145335-3145405,3145479-3145589,3146194-3146382,
3146643-3146670
Length = 258
Score = 60.9 bits (141), Expect = 9e-10
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 13/92 (14%)
Frame = +2
Query: 413 VTGGSLEDSKKAIELSRTDSKLFTTVGCHPTRCSEFL-----------SNPDDYLQGLRD 559
VTGGSL++S++A+E++ TD +L C C +++ +P + Q L
Sbjct: 61 VTGGSLKESREALEIAETDGEL----SCFDAACFDYVLLGAFKEFEESGDPKGHFQALLA 116
Query: 560 LISGN--KDKVVAIGECGLXYERFHFCEKEVQ 649
L K KVVA+GECGL Y+R HFC +VQ
Sbjct: 117 LAKEGIAKGKVVAVGECGLDYDRLHFCPSDVQ 148
>07_01_0412 +
3151059-3151090,3151374-3151833,3151899-3151979,
3152682-3152752,3152827-3152937,3153149-3153231,
3153489-3153705,3154169-3154252,3154423-3154498
Length = 404
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = +2
Query: 527 NPDDYLQGLRDLISGN--KDKVVAIGECGLXYERFHFCEKEVQ 649
+P+ + Q L L K KVVA+GECGL Y+R HFC +VQ
Sbjct: 171 DPEGHFQALLALAKEGIAKGKVVAVGECGLDYDRLHFCPSDVQ 213
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +2
Query: 323 KGVYNGSRKHEPDLDVVLERAWTSGINKIIV 415
+G+Y+G + H D+ VL RAW +G+++IIV
Sbjct: 11 EGIYHGKQCHAADIPAVLARAWAAGVDRIIV 41
Score = 32.3 bits (70), Expect = 0.34
Identities = 17/39 (43%), Positives = 28/39 (71%)
Frame = +2
Query: 362 LDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRTDSKL 478
L+++L W SG VTGGSL++S++A+E++ TD +L
Sbjct: 69 LNLLLSLVW-SGRK---VTGGSLKESREALEIAETDGEL 103
>11_01_0131 + 1086916-1088127,1088213-1089469
Length = 822
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -2
Query: 453 SIAFLLSSRLPPVTMILLMPLVQALSSTTSKSGSCFLDPLYTPLYISS 310
S F + LPP + L V ALS+ + G FL+ L P+++ S
Sbjct: 126 SFGFAVGCALPPFLVGALTGYV-ALSTDDKRKGDTFLNKLSFPIFLGS 172
>04_04_1619 -
34825922-34825998,34826109-34826200,34827281-34827399,
34827507-34827734,34827904-34828164,34828258-34828614,
34828803-34828916,34828990-34829063,34829176-34829359,
34829685-34829830,34829951-34830309,34835569-34835789
Length = 743
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/77 (29%), Positives = 40/77 (51%)
Frame = +2
Query: 320 YKGVYNGSRKHEPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRTDSKLFTTVGCH 499
YKG GSR +PDL + R W + N++ +G ++D+K ++ D+K + C
Sbjct: 81 YKGNICGSRHGDPDLHELDVRYWMNP-NQVYQSG--VKDNK----INLADAKAICLMEC- 132
Query: 500 PTRCSEFLSNPDDYLQG 550
P ++ L+ DY +G
Sbjct: 133 PIPAADGLNFVCDYPEG 149
>04_04_1617 -
34815889-34816080,34816185-34816412,34816591-34816851,
34816943-34817299,34817466-34817579,34817653-34817726,
34817839-34818022,34818349-34818494,34818628-34818986,
34819912-34820132
Length = 711
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/77 (29%), Positives = 40/77 (51%)
Frame = +2
Query: 320 YKGVYNGSRKHEPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIELSRTDSKLFTTVGCH 499
YKG GSR +PDL + R W + N++ +G ++D+K ++ D+K + C
Sbjct: 81 YKGNICGSRHGDPDLHELDVRYWMNP-NQVYQSG--VKDNK----INLADAKAICLMEC- 132
Query: 500 PTRCSEFLSNPDDYLQG 550
P ++ L+ DY +G
Sbjct: 133 PMPAADGLNFVCDYPEG 149
>05_03_0558 + 15454552-15454746,15456700-15457134
Length = 209
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 323 KGVYNGSRKHEPDLDVVLERAWTSGINKIIVTGGSLEDSKKAIE 454
+G+ G+R H P V + W S +K++ G E++ A+E
Sbjct: 63 RGMPAGARTHCPKGGVADDPTWISDGDKVVCGHGRAEEASVAVE 106
>02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263
Length = 769
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +2
Query: 275 LRKYIDIGANLTDDMYKGVYNGSRKHEPDLDVVLERAWTSGINKIIVTG 421
+R ++D G+N DD +K + R PD + +++ N+++V G
Sbjct: 92 VRVFVDAGSNCHDDRFKAISGHYR--TPDYGRSIAYRFSTARNRLVVLG 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,672,967
Number of Sequences: 37544
Number of extensions: 266693
Number of successful extensions: 626
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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