Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A04
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY303576-1|AAP57298.1|  286|Caenorhabditis elegans cell death-re...    57   9e-09
AF036694-6|AAB88340.1|  286|Caenorhabditis elegans Cell-death-re...    57   9e-09
AL132863-1|CAB60573.1|  477|Caenorhabditis elegans Hypothetical ...    40   0.002
AL110480-1|CAB60325.2|  437|Caenorhabditis elegans Hypothetical ...    34   0.10 

>AY303576-1|AAP57298.1|  286|Caenorhabditis elegans cell
           death-related nuclease 2 protein.
          Length = 286

 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 1/127 (0%)
 Frame = +2

Query: 272 ALRKYIDIGANLTDDMYKGVYNGSRKHEPDLDVVLERAWTSGINKIIVTGGSLEDSKKAI 451
           AL + +DIGANL          G   ++ DL+ VL+RA  +G++KI+VTG S + S +  
Sbjct: 2   ALYELVDIGANL----------GHPSYQKDLNDVLDRAKQAGLSKIMVTGTSEKISHECA 51

Query: 452 EL-SRTDSKLFTTVGCHPTRCSEFLSNPDDYLQGLRDLISGNKDKVVAIGECGLXYERFH 628
           +L  +    L+ T G HP    ++    D  L+ L+ L        VA+GECGL + R +
Sbjct: 52  DLVEKYPGFLYFTAGVHPHDAKDW---NDGTLEALKKL--QENPSCVAVGECGLDFNR-N 105

Query: 629 FCEKEVQ 649
           F  ++VQ
Sbjct: 106 FSPQDVQ 112


>AF036694-6|AAB88340.1|  286|Caenorhabditis elegans
           Cell-death-related nuclease protein2 protein.
          Length = 286

 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 1/127 (0%)
 Frame = +2

Query: 272 ALRKYIDIGANLTDDMYKGVYNGSRKHEPDLDVVLERAWTSGINKIIVTGGSLEDSKKAI 451
           AL + +DIGANL          G   ++ DL+ VL+RA  +G++KI+VTG S + S +  
Sbjct: 2   ALYELVDIGANL----------GHPSYQKDLNDVLDRAKQAGLSKIMVTGTSEKISHECA 51

Query: 452 EL-SRTDSKLFTTVGCHPTRCSEFLSNPDDYLQGLRDLISGNKDKVVAIGECGLXYERFH 628
           +L  +    L+ T G HP    ++    D  L+ L+ L        VA+GECGL + R +
Sbjct: 52  DLVEKYPGFLYFTAGVHPHDAKDW---NDGTLEALKKL--QENPSCVAVGECGLDFNR-N 105

Query: 629 FCEKEVQ 649
           F  ++VQ
Sbjct: 106 FSPQDVQ 112


>AL132863-1|CAB60573.1|  477|Caenorhabditis elegans Hypothetical
           protein Y37H2A.1 protein.
          Length = 477

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +2

Query: 419 GGSLEDSKKAIELSRTDSKLFTTVGCHPTRCSEFLSNPDDYLQGLRDLISGNKD-KVVAI 595
           GG+  D    I    ++  L TT GCHP    E+ S  D + Q L  ++S     KV+A+
Sbjct: 238 GGNGYDIDWIINEIESNIYLGTTWGCHPHYAQEWASK-DIFWQTLEHILSNAATWKVLAV 296

Query: 596 GECGLXYER 622
           GECGL   R
Sbjct: 297 GECGLDLHR 305


>AL110480-1|CAB60325.2|  437|Caenorhabditis elegans Hypothetical
           protein Y24F12A.1 protein.
          Length = 437

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
 Frame = +2

Query: 413 VTGGSLEDSKKAIELSRTDSKLFTTVGCHPTRCSEFLSNPDDYLQGLRDLISGNKD-KVV 589
           V G S  D +  ++   +   L TT GCHP   ++       +   +  ++S  ++ KV+
Sbjct: 197 VKGNSSYDVEWIVKELASPLYLGTTWGCHP-HFAQHWGRMGVFWTTMEYILSDAEEWKVL 255

Query: 590 AIGECGLXYERFHFCEKEVQL 652
           A+GECG+     H CE E+++
Sbjct: 256 AVGECGID---LHRCESELEV 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,124,905
Number of Sequences: 27780
Number of extensions: 250875
Number of successful extensions: 594
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)