Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_A03
(426 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 28 2.4
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 27 5.6
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 27 5.6
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 27 5.6
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 27 5.6
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 27 5.6
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 27 5.6
AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical ... 27 5.6
U41263-5|AAC24427.1| 400|Caenorhabditis elegans Hypothetical pr... 27 7.4
AL031627-22|CAI79188.1| 213|Caenorhabditis elegans Hypothetical... 27 7.4
Z69385-9|CAA93425.4| 152|Caenorhabditis elegans Hypothetical pr... 26 9.8
AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (... 26 9.8
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
F40H6.5 protein.
Length = 1288
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 234 TRRPT---LNHGRLTGTSSTSSILPSETTLRRNLLPPNT 341
T+RPT L G + +SST S S TT LPP T
Sbjct: 950 TQRPTSPILTSGATSTSSSTESTTTSPTTSTTTTLPPTT 988
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 263 AYRNKQYKFYSPIRDYSKEESPAPK 337
A RNKQ+ YS D S+ APK
Sbjct: 751 AVRNKQFNMYSENGDLSRPSDSAPK 775
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 263 AYRNKQYKFYSPIRDYSKEESPAPK 337
A RNKQ+ YS D S+ APK
Sbjct: 785 AVRNKQFNMYSENGDLSRPSDSAPK 809
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 263 AYRNKQYKFYSPIRDYSKEESPAPK 337
A RNKQ+ YS D S+ APK
Sbjct: 809 AVRNKQFNMYSENGDLSRPSDSAPK 833
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 263 AYRNKQYKFYSPIRDYSKEESPAPK 337
A RNKQ+ YS D S+ APK
Sbjct: 843 AVRNKQFNMYSENGDLSRPSDSAPK 867
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 263 AYRNKQYKFYSPIRDYSKEESPAPK 337
A RNKQ+ YS D S+ APK
Sbjct: 896 AVRNKQFNMYSENGDLSRPSDSAPK 920
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 263 AYRNKQYKFYSPIRDYSKEESPAPK 337
A RNKQ+ YS D S+ APK
Sbjct: 815 AVRNKQFNMYSENGDLSRPSDSAPK 839
>AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical
protein Y50D7A.1 protein.
Length = 791
Score = 27.1 bits (57), Expect = 5.6
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -3
Query: 346 SLVFGGRRFLLRVVSDGRIELVLL-VPVSLPWFRVGLLVPRYIRITXSQTQSIEHSSTTS 170
SLV G + +L +D R VP L +F RY+ T + SI HS+ S
Sbjct: 200 SLVTWGTQLILFGGNDNRRRCPFANVPPELHYFDTSTSTWRYVPATGNSPSSIGHSAVVS 259
Query: 169 YPHTYI 152
+ ++
Sbjct: 260 GDYMFV 265
>U41263-5|AAC24427.1| 400|Caenorhabditis elegans Hypothetical
protein T19D12.7 protein.
Length = 400
Score = 26.6 bits (56), Expect = 7.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 242 SSCSKIHQDYAXPDAEYRTQLHHILSPHIHTEGSKPYASSNLRGSVLA 99
S C + Y D Y T LHH+L IH + P +S + RG ++
Sbjct: 69 SMCHLLRSSYPDYDISYLTSLHHLL---IHF--NIPSSSYSARGKTMS 111
>AL031627-22|CAI79188.1| 213|Caenorhabditis elegans Hypothetical
protein Y102A5C.36 protein.
Length = 213
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 174 HPIPTHTYRGIKALCFFKLERLSPCILXYLI 82
H IP G+K LCFF +S IL +L+
Sbjct: 5 HLIPRALLLGLKNLCFFVFPFVSFIILMFLV 35
>Z69385-9|CAA93425.4| 152|Caenorhabditis elegans Hypothetical
protein ZK593.2 protein.
Length = 152
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 189 SILCVWLCVILMYLGTR-RPTLNHGRLTGTSST 284
S+LCV+LC+++ TR RP+ H T T
Sbjct: 5 SLLCVFLCILISAPFTRSRPSEEHPMYTAARLT 37
>AF038615-6|AAB94146.1| 157|Caenorhabditis elegans Ground-like (grd
related) protein19 protein.
Length = 157
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Frame = +2
Query: 146 PLYVCVGIGCGGAVFYTL-----RLAXRNPDVSWNKKTN 247
P VC G GCGG + LA R+ D WN + N
Sbjct: 48 PPPVCGGCGCGGRKKREIGHVKGHLAHRDNDQEWNNQCN 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,429,244
Number of Sequences: 27780
Number of extensions: 191384
Number of successful extensions: 524
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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