Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_A03
(426 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49210.1 68416.m05378 expressed protein 29 1.00
At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein... 29 1.00
At4g02540.1 68417.m00347 DC1 domain-containing protein contains ... 29 1.3
At2g41360.1 68415.m05105 F-box family protein similar to SKP1 in... 29 1.7
At1g66450.1 68414.m07549 DC1 domain-containing protein contains ... 29 1.7
At1g15980.1 68414.m01917 expressed protein 29 1.7
At4g26380.1 68417.m03795 DC1 domain-containing protein contains ... 27 4.0
At4g29140.1 68417.m04170 MATE efflux protein-related several hyp... 27 5.3
At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative ... 27 5.3
At1g34200.1 68414.m04243 oxidoreductase family protein similar t... 27 5.3
At2g44600.1 68415.m05552 expressed protein 27 7.0
At4g00230.1 68417.m00025 subtilisin-like serine endopeptidase (X... 26 9.3
At3g23740.1 68416.m02985 expressed protein 26 9.3
At3g04900.1 68416.m00532 heavy-metal-associated domain-containin... 26 9.3
At2g22030.1 68415.m02615 kelch repeat-containing F-box family pr... 26 9.3
>At3g49210.1 68416.m05378 expressed protein
Length = 518
Score = 29.5 bits (63), Expect = 1.00
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = -3
Query: 256 WFRVGLLVPRYIRITXSQTQSIEHSSTTSYPHTYI 152
W R ++V ++ ++ QTQ+IE+ + ++ TY+
Sbjct: 92 WVRTNVVVTDHVIVSDIQTQNIENGNADAFLETYV 126
>At1g65660.1 68414.m07450 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 535
Score = 29.5 bits (63), Expect = 1.00
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 212 RNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDY 310
R +V +N PE EAYR K+ P++D+
Sbjct: 502 RKYNVKYNNDVTPEEMEAYRMKRVHHEDPMKDF 534
>At4g02540.1 68417.m00347 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 822
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -2
Query: 296 ENRTCTACSCKPPMVQGWSSCSKIHQDYAXPDAEYRTQLHHILSPHIHT 150
EN+ C AC+ P + SC + A +R ++HH PH+ T
Sbjct: 552 ENKLCQACTT-PIYFGNFFSCMQCDFILHEKCANFRRKIHHPTHPHLLT 599
>At2g41360.1 68415.m05105 F-box family protein similar to SKP1
interacting partner 6 [Arabidopsis thaliana]
GI:10716957; contains Pfam profile PF00646: F-box domain
Length = 373
Score = 28.7 bits (61), Expect = 1.7
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 337 ILNCFSNIDQLYYENFXCIKL 399
+LNC + + + YYEN C+ +
Sbjct: 19 VLNCLARVPRRYYENISCVSV 39
>At1g66450.1 68414.m07549 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 700
Score = 28.7 bits (61), Expect = 1.7
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 296 ENRTCTACSCKPPMVQG-WSSCSKIHQDYAXPDAEYRTQLHHILSPHIHT 150
EN+ C AC P+ G + SC K + A + ++HH + PH+ T
Sbjct: 422 ENKLCQACIT--PIYSGKFYSCMKCNFILHEECANFSRKIHHPIHPHMLT 469
>At1g15980.1 68414.m01917 expressed protein
Length = 461
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +2
Query: 191 YTLRLAXRNPDVSWN--KKTNP--EPWEAYRNKQYKFYSPIRDYSKEESPAP 334
+ RL R+ DVS N KK NP +P+++ + ++ S D ++E P P
Sbjct: 32 FQTRLTSRSSDVSVNLKKKNNPWLDPFDSGEDPDNEYGSLFADGKQDEDPRP 83
>At4g26380.1 68417.m03795 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 1016
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -2
Query: 296 ENRTCTACSCKPPMVQGWSSCSKIHQDYAXPDAEYRTQLHHILSPHIHT 150
E++ C AC P + SC++ + A + ++HH + PH+ T
Sbjct: 762 EDKLCQAC-VMPIYFGNFYSCTQCNYILHEACANFSRKMHHPVHPHVLT 809
>At4g29140.1 68417.m04170 MATE efflux protein-related several
hypothetical proteins - Arabidopsis thaliana; contains
Pfam profile PF01554: Uncharacterized membrane protein
family
Length = 532
Score = 27.1 bits (57), Expect = 5.3
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = -3
Query: 346 SLVFGGRRFLLRVVSDGRIELVLLV---PVSLPWFRVG 242
S FG RF L ++ R + LLV P+S+ WF VG
Sbjct: 123 SQAFGAHRFKLLSLTLHRTVVFLLVCCVPISVLWFNVG 160
>At2g07560.1 68415.m00875 ATPase, plasma membrane-type, putative /
proton pump, putative similar to P-type
H(+)-transporting ATPase from [Phaseolus vulgaris]
GI:758250, [Lycopersicon esculentum] GI:1621440,
SP|Q03194 {Nicotiana plumbaginifolia}, [Solanum
tuberosum] GI:435001; contains InterPro accession
IPR001757: ATPase, E1-E2 type
Length = 949
Score = 27.1 bits (57), Expect = 5.3
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = -3
Query: 313 RVVSDGRI---ELVLLVPVSLPWFRVGLLVPRYIRITXSQTQSIEHSSTT--SYPHTYIQ 149
+V+ DGR E +LVP L ++G +VP R+ I+ S+ T S P T Q
Sbjct: 136 KVLRDGRWGEQEAAILVPGDLISIKLGDIVPADARLLEGDPLKIDQSALTGESLPATKHQ 195
Query: 148 RDQ 140
D+
Sbjct: 196 GDE 198
>At1g34200.1 68414.m04243 oxidoreductase family protein similar to
AX110P [Daucus carota] GI:285739; contains Pfam profiles
PF01408: Oxidoreductase family NAD-binding Rossmann
fold, PF02894: Oxidoreductase family C-terminal
alpha/beta domain
Length = 352
Score = 27.1 bits (57), Expect = 5.3
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 264 LTGTSSTSSILPSETTLRRNLLPPNTKLFF*Y*SVV 371
++ ++TSSI +++ + N PPNTKL Y S++
Sbjct: 33 ISAIATTSSIEEAKSFAKSNNFPPNTKLHSSYESLL 68
>At2g44600.1 68415.m05552 expressed protein
Length = 313
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -2
Query: 269 CKPPMVQGWSSCSKIHQDYAXPDAEYRTQLHHILSPHIHTEGS 141
C P+V+ +CS + PD Y +L PH+ T S
Sbjct: 252 CLSPLVRAKPNCSSNWKAKFPPDFGYSGELKSPAKPHLSTAAS 294
>At4g00230.1 68417.m00025 subtilisin-like serine endopeptidase
(XSP1) identical to subtilisin-type serine endopeptidase
XSP1 GI:6708179 from [Arabidopsis thaliana]
Length = 749
Score = 26.2 bits (55), Expect = 9.3
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 225 TSGLRXARRRV*NTAPPHPIPTHTYRGIKAL 133
TS L RRRV N PP + T T R K +
Sbjct: 659 TSTLAVFRRRVTNVGPPSSVYTATVRAPKGV 689
>At3g23740.1 68416.m02985 expressed protein
Length = 542
Score = 26.2 bits (55), Expect = 9.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 227 IHQDYAXPDAEYRTQLHHILSPHIHTEGSKPYASSNLRGS 108
++ + + PD E TQ+ H++ + GS+ SS L GS
Sbjct: 297 VNLEQSDPDKEQETQIKHVIPDTENNLGSEIPLSSPLVGS 336
>At3g04900.1 68416.m00532 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 208
Score = 26.2 bits (55), Expect = 9.3
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +2
Query: 200 RLAXRNPDVSWNKKTNPEPWEAYRNKQYKFYSPIRDYSKEESPAP 334
RL P V+ K P P++ Y N + + +Y +++P P
Sbjct: 160 RLKYEEPKVTPRKPPAPYPFDYYENLGFPPSDSLFNYFSDDNPQP 204
>At2g22030.1 68415.m02615 kelch repeat-containing F-box family
protein low similarity to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 383
Score = 26.2 bits (55), Expect = 9.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +1
Query: 337 ILNCFSNIDQLYYENFXCI 393
+LNC + + + YY N C+
Sbjct: 34 VLNCLARVSRRYYPNLSCV 52
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,811,405
Number of Sequences: 28952
Number of extensions: 178189
Number of successful extensions: 452
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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