Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A02
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33265.1 68414.m04113 expressed protein contains Pfam profile...    44   9e-05
At3g43520.1 68416.m04614 expressed protein contains Pfam profile...    40   0.001
At2g26240.1 68415.m03150 expressed protein contains Pfam profile...    37   0.011
At3g57280.1 68416.m06376 expressed protein contains Pfam profile...    32   0.30 
At3g20510.1 68416.m02597 expressed protein contains Pfam profile...    31   0.53 
At2g38550.1 68415.m04736 expressed protein contains Pfam profile...    31   0.53 
At2g19660.1 68415.m02297 DC1 domain-containing protein contains ...    29   3.7  
At1g50740.1 68414.m05706 expressed protein contains Pfam profile...    29   3.7  
At1g68980.1 68414.m07894 pentatricopeptide (PPR) repeat-containi...    28   6.5  
At5g56660.1 68418.m07073 IAA-amino acid hydrolase 2 (ILL2) ident...    27   8.6  
At5g56650.1 68418.m07072 IAA-amino acid hydrolase 3 (IAR3) (ILL1...    27   8.6  

>At1g33265.1 68414.m04113 expressed protein contains Pfam profile
           PF03647: Uncharacterised protein family (UPF0136);
           supporting cDNA gi|23198247|gb|BT000332.1|
          Length = 177

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
 Frame = +3

Query: 111 IIGFAYAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVGAYQLSQDPSNY----XXXXX 278
           ++   Y   +  GG+  Y+K+GS  SL  G+  GS+L   AY L++ P            
Sbjct: 62  VVSATYGVLLLGGGLFAYSKSGSKGSLFGGLT-GSVLMASAYFLTKSPETRVLGDTIGLG 120

Query: 279 XXXXXXXXXXYRYYNSRKFMPAGLMFCLSVGMFT 380
                     +R  +SRK +PAG +  LS+GM +
Sbjct: 121 AAFLFSSVFGFRLASSRKPVPAGPLLLLSIGMLS 154


>At3g43520.1 68416.m04614 expressed protein contains Pfam profile
           PF03647: Uncharacterised protein family (UPF0136)
          Length = 240

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
 Frame = +3

Query: 126 YAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVGAYQLSQDPSNYXXXXXXXXXXXXXX 305
           YA  V  GG+MGY K+GS  SL AG +  ++L    Y  SQ P+                
Sbjct: 144 YAFLVGVGGLMGYLKSGSQKSLLAGGLSAAVL---LYVFSQLPTKPVLASTVGVVMAGAL 200

Query: 306 XY----RYYNSRKFMPAGLMFCLS 365
            Y    RY  S+K  PAG++  +S
Sbjct: 201 MYVMGTRYMRSKKIFPAGVVSIMS 224


>At2g26240.1 68415.m03150 expressed protein contains Pfam profile
           PF03647: Uncharacterised protein family (UPF0136)
          Length = 108

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
 Frame = +3

Query: 123 AYAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVGAYQLSQDPSN----YXXXXXXXXX 290
           AYA+ +  GG+MGY K GS  SL AG   G    +  Y  ++ P N              
Sbjct: 12  AYASLLGVGGLMGYLKRGSKISLVAG---GGSAALFYYVYTELPGNPVLASSIGIVGSAA 68

Query: 291 XXXXXXYRYYNSRKFMPAGLMFCLSVGM 374
                  RY  +RK +PAGL+  +S+ M
Sbjct: 69  LTGMMGSRYLRTRKVVPAGLVSVVSLVM 96


>At3g57280.1 68416.m06376 expressed protein contains Pfam profile
           PF03647: Uncharacterised protein family (UPF0136)
          Length = 226

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 117 GFAYAATVAAGGVMGYAKAGSIPSLGAGIIFG 212
           G  Y   V +GG++G+A + ++ SL  G+++G
Sbjct: 106 GIPYGGLVVSGGLLGFAFSRNLTSLSTGVLYG 137


>At3g20510.1 68416.m02597 expressed protein contains Pfam profile
           PF03647: Uncharacterised protein family (UPF0136)
          Length = 119

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
 Frame = +3

Query: 126 YAATVAAGGVMGYAKAGSIPSL--GAG----IIFGSILGVGAYQLSQDPS-NYXXXXXXX 284
           Y   +  GG +GY K GSI S   GAG    +I    + + A++  ++ +          
Sbjct: 10  YGMLLIGGGFIGYMKKGSITSFAGGAGTGLLLILAGYISLKAFEKKKNSTIAMVLQTVIA 69

Query: 285 XXXXXXXXYRYYNSRKFMPAGLMFCLSVGMFTKLLLK-NVGASRMPIKS 428
                    RY  + K MPAGL+  +S  M    + K   G ++ P K+
Sbjct: 70  AALTLVMGQRYLLTGKIMPAGLVAGISALMTCFYVYKIATGGNKFPAKA 118


>At2g38550.1 68415.m04736 expressed protein contains Pfam profile
           PF03647: Uncharacterised protein family (UPF0136)
          Length = 335

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 114 IGFAYAATVAAGGVMGYAKAGSIPSLGAGIIFGSIL 221
           +G  Y   +  GG + +  +GSIP++  G+I G  L
Sbjct: 207 VGIPYGLLLLVGGFINFMVSGSIPAIRFGVILGGAL 242


>At2g19660.1 68415.m02297 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 662

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +1

Query: 304 WDTDTTIAESSCQQV*CFVSQSECSLNYCSRTLVPAECL*RVVRLNLY 447
           W+ D  ++ +S  +  C+V  S+C L    + +  A+ +  +  LN Y
Sbjct: 601 WEEDLVVSNTSMCRPFCYVCNSQCKLPSIVKVVSKADVVLYICSLNCY 648


>At1g50740.1 68414.m05706 expressed protein contains Pfam profile
           PF03647: Uncharacterised protein family (UPF0136)
          Length = 119

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 126 YAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVGAY 236
           Y   +  GG +GY K GSI SL  G   G ++ +  +
Sbjct: 10  YGILLIVGGFIGYLKKGSIASLAGGAGTGLLVVLAGF 46


>At1g68980.1 68414.m07894 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 619

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 105 LDIIGFAYAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVG 230
           +D +GFA    + +  + GY K+G + S  + +I  S+ GVG
Sbjct: 249 MDGLGFASRRILYSSMISGYVKSGDLDS-ASDVILCSLKGVG 289


>At5g56660.1 68418.m07073 IAA-amino acid hydrolase 2 (ILL2)
           identical to IAA-amino acid hydrolase homolog 2
           precursor [Arabidopsis thaliana] SWISS-PROT:P54970
          Length = 439

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 90  IITMGLDIIGFAYAATVAAGGVMGYAKAGSIP 185
           +I   L++IG  Y   VA  GV+GY   G  P
Sbjct: 74  LIRSELELIGIKYRYPVAITGVIGYIGTGEPP 105


>At5g56650.1 68418.m07072 IAA-amino acid hydrolase 3 (IAR3) (ILL1)
           identical to IAA-amino acid hydrolase 3 [Arabidopsis
           thaliana] SWISS-PROT:P54969
          Length = 438

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 105 LDIIGFAYAATVAAGGVMGYAKAGSIP 185
           LD+IG  Y   VA  G++GY   G  P
Sbjct: 78  LDLIGVKYRFPVAITGIIGYIGTGEPP 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,420,687
Number of Sequences: 28952
Number of extensions: 232926
Number of successful extensions: 563
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)