Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0959
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   0.91 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    28   1.2  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   1.6  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   3.7  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   6.4  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    25   8.5  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   8.5  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   8.5  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 59   AMEVETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQE 217
            A+  ETKST     ++  GG A    +A P  +P P    +P   P+ E +++
Sbjct: 867  AITPETKST---VNQIMSGGEALAAPVAVPAPIPAPVAEPAPPAAPAKEVVEK 916


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 8    SSDAIQLFRSLCRLKVEAMEVETKSTEIRCQEMSKGGLAYE 130
            S D   L+  L R +   +E E  ++  +C E  K  L YE
Sbjct: 2534 SLDEHDLYHGLWRRRANFLETEVATSHEQCHEWEKAQLVYE 2574


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +3

Query: 468 PXTADRGSVQGHRSKMTTAXXKRDENLKKMIQRLREHEEQVRKV 599
           P T+D  +V+        +  + +E  K + +R R+HEE+++++
Sbjct: 331 PTTSDSSNVESSEDVDPASLLQNEEFHKLIEERQRQHEERLKRI 374


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 14  DAIQLFRSLCRLKVEAMEVETKSTEIRCQEM 106
           DA  +FRS+CRL V     + K + IR Q M
Sbjct: 388 DAFLVFRSMCRLAVRQTSPD-KVSNIRSQAM 417


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 355 EALDAKXXTHXEKREAYINELRSRLKDHLEGVEKTRXTLEQ 477
           E L  K  +  ++++  INEL  R+K +   V +   T+++
Sbjct: 530 EGLTLKIDSITKEKDRLINELEQRIKSYEVNVSELNGTIDE 570


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +1

Query: 325 QTNXFIVATXEALDAKXXTHXEKREAYINELRSRLKDHLEGVEKTRXTLEQQTAEV 492
           +T   ++ T  AL+ +      K +AY   L   LK H     + + TLE+ T  V
Sbjct: 32  KTQALVLPTQAALEKEDFNTTAKDQAYFAHLLGMLKHH--NANQRQETLEKLTQYV 85


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 286 SSEQWRXSY*LQATSPLFSCLQXLLDLFDGRSL 188
           SS QWR    + +    ++CLQ +L + DG ++
Sbjct: 762 SSTQWRLMRDVGSIRLQYACLQYMLAVLDGLNI 794


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 167 RRADSPEKTPSVEEIQEXLK 226
           RRAD PE+TPS    ++ L+
Sbjct: 21  RRADRPEETPSSSVYEQNLR 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,511
Number of Sequences: 5004
Number of extensions: 23522
Number of successful extensions: 98
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)