Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0959
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0463 + 3502708-3503535                                           31   0.53 
11_06_0289 - 21969248-21973516                                         31   0.93 
11_06_0185 + 21018045-21022307                                         31   0.93 
01_01_0022 - 170045-170095,170406-170554,170764-170875,171398-17...    27   8.7  

>07_01_0463 + 3502708-3503535
          Length = 275

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +1

Query: 346 ATXEALDAKXXTHXEKREAYINELRSRLKDHLEGVEKTRXTLEQQTAE-VYKAIE 507
           A  E +D K      K+E  + +L+ +LK+ LEG  K++  +E++ A+ + K IE
Sbjct: 190 AKLEKIDTKIQDLQAKKEDILRQLKEQLKEELEG-GKSKNAIEEKPAQTLEKGIE 243


>11_06_0289 - 21969248-21973516
          Length = 1422

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 388 EKREAYINELRSRLKDHLEGVEKTRXTLEQQTAEVYKAI 504
           E  +  I +L  RLKDH+E  EKT+   EQ   E   A+
Sbjct: 398 EWNDNLIEKLAMRLKDHMEADEKTKKLNEQTGVEEETAV 436


>11_06_0185 + 21018045-21022307
          Length = 1420

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 388 EKREAYINELRSRLKDHLEGVEKTRXTLEQQTAEVYKAI 504
           E  +  I +L  RLKDH+E  EKT+   EQ   E   A+
Sbjct: 398 EWNDNLIEKLAMRLKDHMEADEKTKKLNEQTGVEEETAV 436


>01_01_0022 -
           170045-170095,170406-170554,170764-170875,171398-171469,
           171578-171671,171770-171921,172004-172072
          Length = 232

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 489 SVQGHRSKMTTAXXKRDENLKKMIQRLREHEEQVRKVR 602
           S+Q    ++       D+ +KK+ + L  ++EQ+RK R
Sbjct: 16  SIQDATERINKRGESVDDKIKKLDEELGRYKEQIRKTR 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,161,406
Number of Sequences: 37544
Number of extensions: 190382
Number of successful extensions: 623
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)