Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0959
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011)               30   1.7  
SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)                  28   6.7  
SB_27494| Best HMM Match : MFAP1_C (HMM E-Value=0)                     28   6.7  
SB_24737| Best HMM Match : KID (HMM E-Value=0.096)                     27   8.8  
SB_58439| Best HMM Match : L15 (HMM E-Value=1e-05)                     27   8.8  
SB_50620| Best HMM Match : Lectin_C (HMM E-Value=2.1e-14)              27   8.8  

>SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011)
          Length = 299

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 313 IRSEQTNXFIVATXEALDAKXXTHXEKREAYINELRSRLKDHLEGVEKTRXTLEQ 477
           I  EQ         E +  K     EKR++Y+  L++RL +    VE+ R T+E+
Sbjct: 189 IAQEQIEQQSKLIEEKIMQKMEMTKEKRDSYMEALKTRLHEKSLDVEQKRQTMEE 243


>SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)
          Length = 700

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 492 VQGHRSKMTTAXXKRDENLKKMIQRLREHEEQVRKVR 602
           +QGH    T+     D   K+ ++ L+E  EQVR  R
Sbjct: 307 LQGHAQAGTSKSCNCDAEYKRQLEHLQEQLEQVRNER 343


>SB_27494| Best HMM Match : MFAP1_C (HMM E-Value=0)
          Length = 808

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 477 ADRGSVQGHRSKMTTAXXKRDENLKKMIQRLREHEEQV 590
           +DR +VQ  R KM     +++EN KKM++  R++  ++
Sbjct: 326 SDRVTVQ-ERQKMELDEERQEENKKKMMEERRKYSRKI 362


>SB_24737| Best HMM Match : KID (HMM E-Value=0.096)
          Length = 636

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 388 EKREAYINELRSRLKDHLEGVEKTRXTLEQQTAEVYKAIE 507
           E RE  I++L   LKD      + + TLEQ  A++ + +E
Sbjct: 148 EDREKSIDKLEKELKDQEAKHNRQKNTLEQTVAKMKEVME 187


>SB_58439| Best HMM Match : L15 (HMM E-Value=1e-05)
          Length = 203

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 68  VETKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEK 190
           +E +  +I C   +K GL   +   +  G P+PRRA  P K
Sbjct: 127 IERQGGKITCAHYNKLGLRVLLKPEKFEGKPIPRRAHPPSK 167


>SB_50620| Best HMM Match : Lectin_C (HMM E-Value=2.1e-14)
          Length = 620

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = +2

Query: 77  KSTEIRCQEMSKGGLAYEVI--LAEPVGV 157
           K+TE++CQ +++GG+A   +  + E +GV
Sbjct: 202 KNTELQCQSINRGGVAKASVMYIVEDIGV 230


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,421,946
Number of Sequences: 59808
Number of extensions: 201095
Number of successful extensions: 690
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)