Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0959
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80530.1 68414.m09439 nodulin family protein similar to nodul...    28   5.5  
At5g24314.1 68418.m02863 expressed protein                             27   7.2  
At5g08780.1 68418.m01041 histone H1/H5 family protein contains P...    27   7.2  

>At1g80530.1 68414.m09439 nodulin family protein similar to
           nodulin-like protein [Arabidopsis thaliana] GI:3329368,
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 561

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 584 FLMFAXTLDHLLEVLVALXGSC 519
           FL+FA  +DH + V  AL G C
Sbjct: 428 FLLFAMAIDHTIYVATALIGIC 449


>At5g24314.1 68418.m02863 expressed protein
          Length = 161

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 498 GHRSKMTTAXXKRDENLKKMIQRLREHEEQVRKVR 602
           G R        K+D+ L+  +QR+   EEQVRK+R
Sbjct: 41  GRRVWRRRTLTKKDDMLRYKMQRVPFVEEQVRKIR 75


>At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family
          Length = 457

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 53  VEAMEVETKSTEIRCQEMSKGGLAYEV 133
           VE ++VE    E R +  S+GG  YEV
Sbjct: 229 VEVVDVENSENEARIEANSRGGELYEV 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,273,549
Number of Sequences: 28952
Number of extensions: 136085
Number of successful extensions: 488
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)