Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0958
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 106 3e-24
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 54 1e-08
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 40 3e-04
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 35 0.011
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 33 0.046
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 31 0.14
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 31 0.19
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 31 0.19
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 31 0.19
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 31 0.19
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 30 0.25
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 30 0.25
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 30 0.25
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 30 0.25
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 30 0.33
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 30 0.33
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 29 0.57
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 29 0.75
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 28 1.00
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 28 1.3
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 27 1.7
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.7
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 1.7
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 27 2.3
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 26 4.0
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 26 5.3
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 5.3
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 5.3
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 26 5.3
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 26 5.3
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom... 25 7.0
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 25 7.0
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 25 7.0
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 106 bits (254), Expect = 3e-24
Identities = 45/78 (57%), Positives = 56/78 (71%)
Frame = +3
Query: 276 NXVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWAT 455
N V +Y+++GN WK +HD V +DWAP +NRIVTCS DRNAYV+ + DG W
Sbjct: 33 NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ 92
Query: 456 TLVLLRINRAATCVKWSP 509
TLVLLR+NRAAT V+WSP
Sbjct: 93 TLVLLRLNRAATFVRWSP 110
Score = 85.4 bits (202), Expect = 6e-18
Identities = 32/43 (74%), Positives = 42/43 (97%)
Frame = +2
Query: 512 ENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDW 640
E+KFAVGSGAR+IS+CYFE+EN+WWVSKH+K+P+RST+ S+DW
Sbjct: 112 EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDW 154
Score = 31.5 bits (68), Expect = 0.11
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 291 YKKEGNDWKQTNNLVEHDLR--VMGIDWAPNTNRIVTCSVDRNAYV 422
Y ++ NDW + +L + LR ++ +DW PN + DR AYV
Sbjct: 128 YFEQENDWWVSKHL-KRPLRSTILSLDWHPNNVLLAAGCADRKAYV 172
Score = 29.5 bits (63), Expect = 0.43
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 4/107 (3%)
Frame = +3
Query: 225 MSCMEQG*KS---IAFSPNNNXVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVT 395
++C++ KS + S + N K+ WKQT L+ + + W+PN ++
Sbjct: 58 VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAV 117
Query: 396 CSVDRNAYVWTQGDDGKWATTLVLLR-INRAATCVKWSPWRTSLLSG 533
S R V + W + L R + + W P L +G
Sbjct: 118 GSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 54.4 bits (125), Expect = 1e-08
Identities = 28/93 (30%), Positives = 47/93 (50%)
Frame = +3
Query: 255 IAFSPNNNXVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQG 434
+A + ++ V I +K +DW+ T L H+ V I W+ N N + TCS D++ ++W
Sbjct: 349 LAVASFDSVVSINEKIDDDWECTAALEGHENEVKCIAWSCNGNYLATCSRDKSVWIWEAT 408
Query: 435 DDGKWATTLVLLRINRAATCVKWSPWRTSLLSG 533
+D ++ VL + V W P L+SG
Sbjct: 409 EDDEFDCLAVLQEHTQDVKVVTWHPTEDLLVSG 441
Score = 41.9 bits (94), Expect = 8e-05
Identities = 22/84 (26%), Positives = 40/84 (47%)
Frame = +3
Query: 273 NNXVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWA 452
+N + ++ +G+DW T L H V + ++PN N + + D N ++W + +
Sbjct: 444 DNSICFWRDDGDDWALTCQLQGHTNTVWALAFSPNGNTLASADNDGNVFLWIKISSNEDV 503
Query: 453 TTLVLLRINRAATCVKWSPWRTSL 524
T+ I R A +W +TSL
Sbjct: 504 ATIDSTNILRPALQEEWKQ-QTSL 526
Score = 30.3 bits (65), Expect = 0.25
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +3
Query: 330 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW-TQGDDGKWATTLVLLRINRAATCVKWS 506
L EH V + W P + +V+ S D + W GDD WA T L + +S
Sbjct: 419 LQEHTQDVKVVTWHPTEDLLVSGSYDNSICFWRDDGDD--WALTCQLQGHTNTVWALAFS 476
Query: 507 PWRTSLLS 530
P +L S
Sbjct: 477 PNGNTLAS 484
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 39.9 bits (89), Expect = 3e-04
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Frame = +3
Query: 243 G*KSIAFSPNNNXVHIYKKEG--NDWKQTNNLVEHDLRVMGIDWAPNTNR----IVTCSV 404
G K +A + +N V I+ + N+W + L H + WAP+ + + S
Sbjct: 170 GPKKLATAGCDNLVKIWAFDAGVNNWILEDTLAGHVDWTRDVAWAPSVGLTKTYLASASQ 229
Query: 405 DRNAYVWTQGDDGKW-ATTLVLLRINRAATCVKWS 506
D+N ++WT+ DG W T L + A V WS
Sbjct: 230 DKNVFIWTKEGDGPWQKTPLTEEKFPDIAWRVSWS 264
Score = 32.3 bits (70), Expect = 0.061
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 IAFSPNNNXVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNT-NRIVTC-SVDRNAYVWT 428
+A + + V ++++ G W + + H V + WAP+ ++ C S D V
Sbjct: 70 LASASYDGHVIVWRETGGVWSELMDHTAHQASVNAVSWAPHEYGALLACASSDGKVSVLE 129
Query: 429 QGDDGKWATTLVLLRINRAATCVKWSP 509
DDG T + V WSP
Sbjct: 130 FKDDGS-CDTRIFTAHEPGCNAVCWSP 155
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 34.7 bits (76), Expect = 0.011
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +3
Query: 255 IAFSPNNNXVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 425
+A S +N V +Y + K NL H L V+ +D + ++ +VTCS D+N +W
Sbjct: 549 VAASLLDNTVKVYYLDS--LKFFLNLYGHKLPVLSMDISYDSKLLVTCSADKNVKIW 603
Score = 28.3 bits (60), Expect = 1.00
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 327 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLR 473
++ H +M + + P+T TCS DR W DGK ++ LR
Sbjct: 613 SIFAHQDSIMEVTFQPDTYNFFTCSKDREVRYW----DGKSFDLILKLR 657
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 32.7 bits (71), Expect = 0.046
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 330 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW-TQGDDGKWATT 458
L+ H+ VM +DW P I++ S D + VW + G W T
Sbjct: 264 LMGHEDWVMSVDWHPTKEMILSSSADSSMIVWEPDTNTGIWVVT 307
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 288 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ-GDDGKW 449
++K++ W Q ++ H V G+ W P ++ D+ ++ + D W
Sbjct: 352 LWKQDAGQWLQLPSISGHTKSVKGVAWDPEGKFYLSAGTDQTTRLFARFKKDNAW 406
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +3
Query: 264 SPNNNXVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 440
+P + + +Y E W Q L H L V I ++P+ I++ DR + Q ++
Sbjct: 554 TPEHAVIRLY--ETQSWNQQQVLKGHSLTVTTIKFSPDDRYILSAGRDRLVCLHEQAEN 610
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 31.1 bits (67), Expect = 0.14
Identities = 14/60 (23%), Positives = 29/60 (48%)
Frame = +3
Query: 330 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 509
L H+ V+ ++++PN + +C D+ +W + K +L+ + CV+W P
Sbjct: 217 LAAHNGVVLCVNYSPNGVFLASCGRDKTIRIWDSTSNKK--KSLITINNVSPLNCVRWRP 274
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 30.7 bits (66), Expect = 0.19
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 336 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 440
EH+L +G+ W+ N+ + S D+N YVW+ D
Sbjct: 269 EHNL--LGVAWSRNSRFVGAGSSDKNVYVWSATGD 301
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 30.7 bits (66), Expect = 0.19
Identities = 20/86 (23%), Positives = 36/86 (41%)
Frame = +3
Query: 282 VHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 461
V+++ E N+++ N +H +P+ I SVD VW D K +
Sbjct: 83 VYVWNPETNEFRDLGNNAQHPSECWSSCISPDGQTIAFTSVDGRIAVWDNPSDCKISE-- 140
Query: 462 VLLRINRAATCVKWSPWRTSLLSGQE 539
L + C+ +SP ++SG +
Sbjct: 141 -LDTKGKFGLCIDYSPNGRFIVSGHQ 165
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 30.7 bits (66), Expect = 0.19
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +3
Query: 255 IAFSPNNNXVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 425
+A S ++ V IY+ + L EH V+ ++W+ + ++ + SVD++A V+
Sbjct: 45 LAASSWDSKVRIYEVQATGQSIGKALYEHQGPVLSVNWSRDGTKVASGSVDKSAKVF 101
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 30.7 bits (66), Expect = 0.19
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +3
Query: 315 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 494
K+ L+ H V I W+P+ +++CS D++ +W D L + + +C
Sbjct: 246 KRVFRLIGHIDTVAYIRWSPDDRYLLSCSCDKSVILW----DAFTGEKLRDYKHGFSVSC 301
Query: 495 VKWSPWRTSLLSG 533
W P S ++G
Sbjct: 302 CCWLPDGLSFITG 314
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 30.3 bits (65), Expect = 0.25
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +3
Query: 261 FSPNNNXVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ 431
+S NN N+ Q ++L+ H V G+ +P I++CS D +W++
Sbjct: 376 YSSTNNGPQPLVGSQNEPLQKSSLIGHTRPVFGVSISPQKEFILSCSEDGFTRLWSK 432
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 30.3 bits (65), Expect = 0.25
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +3
Query: 315 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 428
K +L H+ +V +DW+P+ R+ + D+ +W+
Sbjct: 464 KMKFDLPGHEDQVFAVDWSPDGQRVASGGADKAVRIWS 501
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 30.3 bits (65), Expect = 0.25
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +3
Query: 294 KKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 425
+K +W+ L+ HD + + W+ ++ +V+ +D + VW
Sbjct: 118 EKHTENWRSYRRLLGHDNDIQDLCWSYDSQLVVSVGLDSSIIVW 161
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 30.3 bits (65), Expect = 0.25
Identities = 16/75 (21%), Positives = 35/75 (46%)
Frame = +3
Query: 282 VHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 461
+ +YK +G T + HD ++ + + + ++T S D +W++GD G + L
Sbjct: 369 LRVYKVDGKAPVSTVSHA-HDNSIVALRYNLRISLLLTASSDTTVKLWSRGDAGAF-ECL 426
Query: 462 VLLRINRAATCVKWS 506
+ + C+ W+
Sbjct: 427 HVFSFSSPVNCIDWN 441
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 29.9 bits (64), Expect = 0.33
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +3
Query: 288 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 425
+Y +G Q + H + I W+P++++ VT S + +W
Sbjct: 213 VYVFDGKTGDQVYEIDAHKGSIFSISWSPDSSQFVTSSAGYSCKIW 258
Score = 28.3 bits (60), Expect = 1.00
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 AFSPNNNXVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 437
A + ++N ++ + G ++ +L H V + ++PN R + D YV+
Sbjct: 163 ATASDDNSINFF--HGTPYRFNRSLRVHSKFVYDVRYSPNDERFASAGADGKVYVF---- 216
Query: 438 DGKWATTLVLLRINRAAT-CVKWSP 509
DGK + + ++ + + WSP
Sbjct: 217 DGKTGDQVYEIDAHKGSIFSISWSP 241
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = +3
Query: 255 IAFSPNNNXVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAY 419
+A N V I+ G D N + R+ +DW ++ RI+ + Y
Sbjct: 73 VASGDNQGNVRIWDCAGEDKILKNQVTAISGRITDLDWDGDSQRIIAVGEGKERY 127
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 29.9 bits (64), Expect = 0.33
Identities = 17/71 (23%), Positives = 27/71 (38%)
Frame = +3
Query: 318 QTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCV 497
Q L H V G+ W + ++ + D +W D N A V
Sbjct: 296 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW---DARSSIPKFTKTNHNAAVKAV 352
Query: 498 KWSPWRTSLLS 530
W PW+++LL+
Sbjct: 353 AWCPWQSNLLA 363
Score = 27.9 bits (59), Expect = 1.3
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +3
Query: 360 IDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWS 506
+DW+ N N +V +++RN YVW D G + L + VKWS
Sbjct: 186 LDWS-NLN-VVAVALERNVYVW-NADSGS-VSALAETDESTYVASVKWS 230
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 29.1 bits (62), Expect = 0.57
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 339 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 428
H VMG+ TN + +CS DR+ VW+
Sbjct: 249 HRDAVMGLAMRRGTNEMFSCSADRSIKVWS 278
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 28.7 bits (61), Expect = 0.75
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 330 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 425
L EH +++ + W+PN ++ T S D +W
Sbjct: 345 LDEHIRQIVAMAWSPNGYQLATSSADDTVKIW 376
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 28.3 bits (60), Expect = 1.00
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 464 NKSSCPFPIISLSPDVSITVNRTRNNTVGVGSPINPH 354
NK S I SLSP ++ + N ++ +G+ +NPH
Sbjct: 408 NKESIKQRIPSLSPPITRSYNAKHRPSLVLGTSVNPH 444
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 339 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 425
H++ V + ++PN ++ VT S D + VW
Sbjct: 163 HEMEVRDVAFSPNDSKFVTASDDGSLKVW 191
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 372 PNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL-LRINRAATCV 497
P +N IVTCS D ++W + + T+ L +++ ++ C+
Sbjct: 303 PPSNNIVTCSTDGLVHIWEPDMFSRPSETICLSSQVDSSSQCI 345
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -3
Query: 494 ASRCSVDTQKNKSSCPFPIISLSPDVSITVNRTRNNTVGVGSPINPHHSKVVFH 333
A S T N + P PI +L PD T++ + ++ + +G+ PHHS + H
Sbjct: 142 ADNSSSSTTSNPNVAP-PISTL-PDPVATISSSSSSHLDMGAIHPPHHSSLPPH 193
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 330 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 428
L+ H V G ++P+ +++CS D +A +W+
Sbjct: 375 LLSHSGPVYGTTFSPDNKYLLSCSEDASARLWS 407
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 339 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAAT-CVKWSPWR 515
H+ + G+ W + ++ + D N +VW D + + L + AA + WSP +
Sbjct: 248 HEQEICGLQWDRSLGQLASGGNDNNLFVW----DYRSSRPLHKFEEHTAAVKAIGWSPHQ 303
Query: 516 TSLLS 530
+L+
Sbjct: 304 RGILA 308
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +3
Query: 330 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAAT-CVKWS 506
L H V G++W N N + + D VW + ++ L + AA + WS
Sbjct: 370 LTAHRQEVCGLEWNSNENLLASGGNDNALMVWDKFEE----KPLYSFHNHIAAVKAITWS 425
Query: 507 PWRTSLLS 530
P + +L+
Sbjct: 426 PHQRGILA 433
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 276 NXVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPN 377
N +IYK+ + WK+ L H + I WAP+
Sbjct: 192 NDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPS 226
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +3
Query: 339 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 425
H LR+ + + P N ++ S+D++ VW
Sbjct: 546 HSLRIYSVLYEPERNICISGSMDKSIRVW 574
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -3
Query: 425 PDVSITVNRTRNNTVGVGSPINPHHSKVVFHKVVCLLP 312
PD I R R+++ + I+PHHS+ + ++ +P
Sbjct: 472 PDSDICFTRRRSDSNRTWTVIDPHHSQSFDNDILAEIP 509
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 333 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 467
V H L ++ I + N + +DR VW D +W T LVL
Sbjct: 592 VHHQLDILKIAVSENYKTFASVGLDRCLVVW---DLRQWCTKLVL 633
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 560 YFEKENNWWVSKHIKKPIRSTVTSID 637
YF+++N W + K KK ++ ++TS+D
Sbjct: 30 YFDEDNIWDLDK-FKKNLKVSITSLD 54
>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 416 LRLDSRR*WEMGNYSCSSAYQPSSDLREMVSMEN 517
LR D RR EM N+ C +PS + + + N
Sbjct: 12 LRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGN 45
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 7.0
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +3
Query: 120 VVSPQLLQFHKNSGI*SEIENGTNVN-FW*LMRADNMSCMEQG*KSIAFSPN-NNXVHIY 293
+ P L KN I +++ G N+N + +A +QG S+ F+ + + + +
Sbjct: 98 IAIPHLSLEDKNEDIWTKVV-GINLNGAYYTAQAAGHHFKKQGKGSLIFTASMSGHIANW 156
Query: 294 KKEGNDWKQTNNLVEHDLRVMGIDWAP 374
++ + T V+H R + ++WAP
Sbjct: 157 PQQWASYHATKAAVKHLARALAVEWAP 183
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = -3
Query: 512 PWRPFHASRCSVDTQKNKSSCPFPIISLSPDVSITVNRTRN 390
PW+ +A RC V+ C ++S D + + RN
Sbjct: 244 PWKEVYAERCRVECNWRHGRCRQVVLSGHSDGVMCLQLVRN 284
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,160
Number of Sequences: 5004
Number of extensions: 57315
Number of successful extensions: 215
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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