Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0958
(643 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical ... 103 1e-22
AL034393-7|CAA22322.2| 337|Caenorhabditis elegans Hypothetical ... 42 3e-04
Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical pr... 37 0.011
AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical... 37 0.011
AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily a... 36 0.025
Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical pr... 34 0.075
U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated p... 33 0.13
AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein. 33 0.13
Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical pr... 32 0.30
AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical ... 32 0.30
U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical pr... 32 0.40
Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical pr... 31 0.53
U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated p... 30 1.2
U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical pr... 30 1.2
AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical... 30 1.2
AL021481-1|CAA16333.1| 363|Caenorhabditis elegans Hypothetical ... 30 1.6
Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical pr... 28 4.9
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 28 4.9
Z47358-8|CAA87433.1| 702|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z31590-4|CAD27606.1| 495|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z31590-3|CAD27605.1| 607|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z31590-2|CAD27604.1| 538|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical pr... 28 6.5
U21321-1|AAG00051.1| 507|Caenorhabditis elegans Fizzy (cdc20 pr... 28 6.5
AC026301-5|AAK68894.1| 745|Caenorhabditis elegans Hypothetical ... 28 6.5
AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore... 28 6.5
Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p... 27 8.6
Z81476-5|CAB03916.1| 332|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z79756-4|CAB02116.2| 478|Caenorhabditis elegans Hypothetical pr... 27 8.6
AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore... 27 8.6
>AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical
protein Y79H2A.6 protein.
Length = 368
Score = 103 bits (247), Expect = 1e-22
Identities = 47/93 (50%), Positives = 59/93 (63%)
Frame = +3
Query: 255 IAFSPNNNXVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQG 434
IA S ++N +HI++ DW+ + L EHDL V G+DW TNRIV+CS D+NA+VWT
Sbjct: 29 IAVSASSNDIHIFEWRNGDWQSIHTLSEHDLPVTGLDWGTKTNRIVSCSQDKNAFVWT-F 87
Query: 435 DDGKWATTLVLLRINRAATCVKWSPWRTSLLSG 533
D W LVL+R NRAAT VKWSP G
Sbjct: 88 DKNVWKPELVLVRFNRAATYVKWSPLENKFAVG 120
Score = 88.6 bits (210), Expect = 3e-18
Identities = 35/44 (79%), Positives = 42/44 (95%)
Frame = +2
Query: 509 MENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDW 640
+ENKFAVGSGA+L+S+CY+EKEN+WWVSK IKKPIRSTVT +DW
Sbjct: 113 LENKFAVGSGAKLVSVCYYEKENDWWVSKQIKKPIRSTVTCLDW 156
Score = 35.5 bits (78), Expect = 0.033
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +1
Query: 217 PITCHAWNKDRSQL 258
PITCHAWNKDR+Q+
Sbjct: 16 PITCHAWNKDRTQI 29
>AL034393-7|CAA22322.2| 337|Caenorhabditis elegans Hypothetical
protein Y18D10A.9 protein.
Length = 337
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/83 (24%), Positives = 41/83 (49%)
Frame = +3
Query: 282 VHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 461
V +Y++E ++ + N L H+ V ++ + + TCS D++ + W Q +D ++ +
Sbjct: 91 VVVYQQEDGEFAEVNKLEGHESEVKCAVFSKSDEFLATCSRDKSVWFWQQDEDEDFSVSS 150
Query: 462 VLLRINRAATCVKWSPWRTSLLS 530
+L + V W P L+S
Sbjct: 151 ILQPHTQDVKQVAWHPTEDLLVS 173
>Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical
protein K08F9.2 protein.
Length = 600
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/72 (22%), Positives = 33/72 (45%)
Frame = +3
Query: 324 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 503
N+ H +V+ + W+P+ R+ T S+D + +W G+ + + V+W
Sbjct: 519 NSWTFHTSKVLTVAWSPDNQRLATGSIDTSVIIWDMKKPGEHPVIIKGAHPMSSVNVVRW 578
Query: 504 SPWRTSLLSGQE 539
T + +GQ+
Sbjct: 579 LDETTVVSAGQD 590
Score = 31.1 bits (67), Expect = 0.70
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 333 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 425
V H + + W+P+ +RI T S D++ +W
Sbjct: 234 VAHTGSIFALAWSPDQSRIATASADKSVKIW 264
>AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical
protein Y111B2A.17 protein.
Length = 778
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 306 NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ 431
++W + + ++ H L V I W P+ R++T S DR A ++T+
Sbjct: 596 SNWSKKSEIIGHQLTVTQIAWNPSGTRLLTVSRDRTAKLYTE 637
>AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily
assigned gene nameprotein 305 protein.
Length = 869
Score = 35.9 bits (79), Expect = 0.025
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +3
Query: 291 YKKEGNDWKQTN-NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 467
+K +D + N NL H + + W + +++ +C YVW + DD +W+ LV
Sbjct: 51 FKPTPDDLTRYNFNLRGHHNAIRMVTWNKSQSKLASCDASGIIYVWVRNDD-RWSVELVN 109
Query: 468 LRINRAATCVKWSPWRTSLL 527
R + + + WSP S L
Sbjct: 110 DRGVKVSD-LSWSPCGGSAL 128
>Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical
protein T04A8.7a protein.
Length = 681
Score = 34.3 bits (75), Expect = 0.075
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 306 NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC----SVDRNAYVWTQGDDGKWATTL 461
+ +KQ V+ D V G++WAP ++ + D+NA V+ + + GKW+ T+
Sbjct: 51 SSYKQFGLNVQPDNSVKGLEWAPAAEKLALIGDFNNWDQNANVYKKEEHGKWSITV 106
>U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated
protein 78, isoform a protein.
Length = 611
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/73 (23%), Positives = 30/73 (41%)
Frame = +3
Query: 321 TNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK 500
TN+ H +V + W+P+ R+ T S+D + VW + + V
Sbjct: 529 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI 588
Query: 501 WSPWRTSLLSGQE 539
W T + +GQ+
Sbjct: 589 WLNETTIVSAGQD 601
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 333 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 425
V H V G+ W+P+ +I + S D+ +W
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
>AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein.
Length = 611
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/73 (23%), Positives = 30/73 (41%)
Frame = +3
Query: 321 TNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK 500
TN+ H +V + W+P+ R+ T S+D + VW + + V
Sbjct: 529 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI 588
Query: 501 WSPWRTSLLSGQE 539
W T + +GQ+
Sbjct: 589 WLNETTIVSAGQD 601
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 333 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 425
V H V G+ W+P+ +I + S D+ +W
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
>Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical
protein C36B1.5 protein.
Length = 496
Score = 32.3 bits (70), Expect = 0.30
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 312 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 437
W+ L HD R++ +D +P+ + + + DR +W Q D
Sbjct: 454 WQPLRQLQGHDTRILCVDISPDGQWMCSSAFDRTFKLWAQSD 495
>AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical
protein Y54H5A.1 protein.
Length = 453
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 357 GIDWAP-NTNRIVTCSVDRNAYVWTQGDDGKWAT-TLVLLRINRAATCVKWSPWRTSLLS 530
G+ W+ T + T + + Y+W + G+WA L ++ + WSP T LL+
Sbjct: 233 GLAWSSLKTGDLATGDIIKKIYLWQMKEGGQWAVGANPLTGHKKSVEDLAWSPTETGLLA 292
Query: 531 GQELD 545
D
Sbjct: 293 SCSAD 297
>U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical
protein T10F2.4 protein.
Length = 492
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 312 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 428
W + +L +H V G+ + N +VTCS+D++ V++
Sbjct: 453 WSEVVSLSDHSGPVTGVRFGENARSLVTCSLDKSLRVFS 491
>Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical
protein R06A4.9 protein.
Length = 809
Score = 31.5 bits (68), Expect = 0.53
Identities = 23/88 (26%), Positives = 36/88 (40%)
Frame = +3
Query: 342 DLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPWRTS 521
D + G+ +AP + T S D A VW D ++ VL C+ W P +
Sbjct: 217 DEAIRGLAFAPTDVKFATASDDGTARVW---DFARYTEERVLRGHGAEVRCIDWHPTKGL 273
Query: 522 LLSGQELD*YQFAILRRKIIGGCLSILR 605
+ +G D Q + G CL+ L+
Sbjct: 274 IATGSR-DTQQPVKIWDPKSGSCLATLQ 300
>U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated
protein 78, isoform b protein.
Length = 517
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 333 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 425
V H V G+ W+P+ +I + S D+ +W
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
>U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical
protein F13H8.2 protein.
Length = 929
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 273 NNXVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 425
NN +Y N K +L H L V +D AP++ VT SVD++ VW
Sbjct: 565 NNTCSVYFV--NTLKFFVSLYGHSLPVTCVDIAPSSKLCVTGSVDKSVKVW 613
>AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical
protein Y110A7A.8 protein.
Length = 504
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -3
Query: 437 ISLSPDVSITV-NRTRNNTVGVGS-PINPHHSKVVFHKVVCLLP 312
++ P ++ V +T+ N +G + NPHH + FH++V +P
Sbjct: 250 LATMPSCNVQVLGKTKKNLIGFSTVSTNPHHGFIYFHQLVQKMP 293
>AL021481-1|CAA16333.1| 363|Caenorhabditis elegans Hypothetical
protein Y43F4B.4 protein.
Length = 363
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 294 KKEGNDWKQTNNLVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQ 431
K +GN W+++ + H V + WA P +IV TCS DR +W +
Sbjct: 47 KPDGN-WRRSAHWKCHGGAVWRVIWAHPEFGQIVATCSYDRTIVIWEE 93
Score = 29.5 bits (63), Expect = 2.1
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 360 IDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 449
+ + P+ R+ TC+ D +W + DG W
Sbjct: 23 VSFDPHGRRMATCASDMTMAIWDRKPDGNW 52
>Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical protein
F36D3.5 protein.
Length = 1152
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 285 HIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 440
HI+ E D K TN+ +E + + APNT ++ D N + T D
Sbjct: 931 HIWMDERTDNKITNDFMEKFQAITSDEAAPNTTHVIV-KTDENGVLETDDLD 981
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 446 MGNYSCSSAYQPSSDLREMVSMENKFAVGSGARLISICYFEKE 574
+G C S Y+PSSD R + +++ V S + + C F+ E
Sbjct: 1918 IGTCLCDSGYEPSSD-RSSCVLNDRYNVRSRSYPKTFCTFDSE 1959
>Z47358-8|CAA87433.1| 702|Caenorhabditis elegans Hypothetical
protein ZK1307.6 protein.
Length = 702
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/66 (25%), Positives = 25/66 (37%)
Frame = +3
Query: 330 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 509
L H V G+ W+P+ + + D VW + T + N A + WSP
Sbjct: 518 LTNHRQEVCGLKWSPDKQLLASGGNDNQLLVWNLRRNEPIQT---YTQHNAAVKALAWSP 574
Query: 510 WRTSLL 527
LL
Sbjct: 575 HHHGLL 580
>Z31590-4|CAD27606.1| 495|Caenorhabditis elegans Hypothetical
protein R01H10.3d protein.
Length = 495
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 339 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG 443
H + + W+P N N I +CS D VW D G
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRG 113
>Z31590-3|CAD27605.1| 607|Caenorhabditis elegans Hypothetical
protein R01H10.3c protein.
Length = 607
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 339 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG 443
H + + W+P N N I +CS D VW D G
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRG 113
>Z31590-2|CAD27604.1| 538|Caenorhabditis elegans Hypothetical
protein R01H10.3b protein.
Length = 538
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 339 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG 443
H + + W+P N N I +CS D VW D G
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRG 113
>Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical
protein R01H10.3a protein.
Length = 605
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 339 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG 443
H + + W+P N N I +CS D VW D G
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRG 113
>U21321-1|AAG00051.1| 507|Caenorhabditis elegans Fizzy (cdc20
protein family) homologprotein 1 protein.
Length = 507
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 273 NNXVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 425
N+ V I + + W N H V ++W+ + N V+ S DR A +W
Sbjct: 295 NHDVRISQHVVSSWGGDNG---HCRDVTALEWSADENMCVSGSSDRTAKIW 342
>AC026301-5|AAK68894.1| 745|Caenorhabditis elegans Hypothetical
protein Y54F10BM.3 protein.
Length = 745
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/85 (24%), Positives = 37/85 (43%)
Frame = +3
Query: 291 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLL 470
+KK N+ ++ VE R G D +++ ++D Y G GK A +
Sbjct: 290 FKKPQNELRENEVWVE---RQTGPDIDKDSDPKTENALDEQDYQLEDGWHGKSALNITRK 346
Query: 471 RINRAATCVKWSPWRTSLLSGQELD 545
+ T + +SP S++ G+E D
Sbjct: 347 EFKKLFTKMSYSPSMCSIIPGKERD 371
>AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform a protein.
Length = 313
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Frame = +3
Query: 291 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNT------NRIVTCSVDRNAYVWTQGD 437
Y N+W + H+ V + WAP + R+V+ D+N +W D
Sbjct: 135 YDNSSNEWISSKIQKCHEQGVNSVCWAPGSADPAAKKRLVSAGNDKNVKIWAFDD 189
>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
protein F26D2.10 protein.
Length = 1213
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 285 HIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 440
HI+ E D K TN+ +E + + APNT ++ D N + T D
Sbjct: 992 HIWMDEITDNKITNDFMEKFQAITSDEAAPNTTHVIV-KTDENGVLDTDNLD 1042
>Z81476-5|CAB03916.1| 332|Caenorhabditis elegans Hypothetical
protein C25F9.8 protein.
Length = 332
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 192 VNFW*LMRADNMSCMEQG*KSIAFSPNNNXVHIY 293
+N+W M C + G + + FSPNN+ + ++
Sbjct: 296 INYWIPSDEFEMKC-DDGYRPVVFSPNNDPIEVF 328
>Z79756-4|CAB02116.2| 478|Caenorhabditis elegans Hypothetical
protein F53C11.7 protein.
Length = 478
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 330 LVEHDLRVMGIDWAPNT-NRIVTCSVDRNAYVW 425
L H+ + G+ WAP++ + I T D A +W
Sbjct: 398 LRNHEATINGLSWAPHSGSHICTAGDDYQALIW 430
>AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform b protein.
Length = 211
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Frame = +3
Query: 291 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNT------NRIVTCSVDRNAYVWTQGDDG 443
Y N+W + H+ V + WAP + R+V+ D+N +W G
Sbjct: 135 YDNSSNEWISSKIQKCHEQGVNSVCWAPGSADPAAKKRLVSAGNDKNVKIWALSQFG 191
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,108,320
Number of Sequences: 27780
Number of extensions: 324354
Number of successful extensions: 815
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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