Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0958
(643 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31300.1 68415.m03821 transducin family protein / WD-40 repea... 99 1e-21
At2g30910.2 68415.m03768 transducin family protein / WD-40 repea... 99 1e-21
At2g30910.1 68415.m03767 transducin family protein / WD-40 repea... 99 1e-21
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 42 5e-04
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 41 6e-04
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 40 0.001
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 37 0.010
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 36 0.030
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 34 0.070
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 33 0.12
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 33 0.16
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 33 0.16
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 32 0.28
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 32 0.28
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 32 0.37
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 31 0.49
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 31 0.49
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 31 0.49
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 31 0.49
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 31 0.49
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 31 0.49
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 31 0.65
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 31 0.65
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 31 0.86
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 31 0.86
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 31 0.86
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 31 0.86
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 31 0.86
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 30 1.5
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 29 2.0
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 29 2.0
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 29 2.0
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 29 2.6
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 29 2.6
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 29 2.6
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 29 2.6
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 29 2.6
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 29 2.6
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 29 3.5
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 28 4.6
At1g09750.1 68414.m01094 chloroplast nucleoid DNA-binding protei... 28 4.6
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 28 6.1
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 28 6.1
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 27 8.0
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 27 8.0
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 27 8.0
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 27 8.0
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 27 8.0
>At2g31300.1 68415.m03821 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
identical to putative ARP2/3 protein complex subunit p41
(GI:4432825)[Arabidopsis thaliana]; similar to ARP2/3
complex 41 kDa subunit (P41-ARC) (Actin-related protein
2/3 complex subunit 1B) (SP:Q9WV32) [Mus musculus]
Length = 378
Score = 99 bits (238), Expect = 1e-21
Identities = 45/86 (52%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 IAFSPNNNXVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ 431
+A PNN VHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW+
Sbjct: 25 VALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSL 84
Query: 432 GDDGKWATTLVLLRINRAATCVKWSP 509
+ +W TLV+LR+NRAA CV+WSP
Sbjct: 85 -EGAEWVPTLVILRLNRAALCVQWSP 109
Score = 71.3 bits (167), Expect = 5e-13
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = +2
Query: 512 ENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDW 640
ENKFAVGSGA+ + ICY+E+ENNWWVSK I+K S+VTS+ W
Sbjct: 111 ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAW 153
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 291 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 428
Y++E N W H+ V + W PN + T S D V++
Sbjct: 128 YEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFS 173
>At2g30910.2 68415.m03768 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 99 bits (238), Expect = 1e-21
Identities = 45/86 (52%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 IAFSPNNNXVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ 431
+A PNN VHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW+
Sbjct: 25 VALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSL 84
Query: 432 GDDGKWATTLVLLRINRAATCVKWSP 509
+ +W TLV+LR+NRAA CV+WSP
Sbjct: 85 -EGAEWVPTLVILRLNRAALCVQWSP 109
Score = 71.3 bits (167), Expect = 5e-13
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = +2
Query: 512 ENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDW 640
ENKFAVGSGA+ + ICY+E+ENNWWVSK I+K S+VTS+ W
Sbjct: 111 ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAW 153
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +3
Query: 291 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT---QGDDGKWA 452
Y++E N W H+ V + W PN + T S D V++ +G D K+A
Sbjct: 128 YEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFSTFIKGVDTKYA 184
>At2g30910.1 68415.m03767 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400) (1
weak); similar to ARP2/3 complex 41 kDa subunit
(P41-ARC) (Actin-related protein 2/3 complex subunit 1B)
(SP:O88656) [Rattus norvegicus]
Length = 378
Score = 99 bits (238), Expect = 1e-21
Identities = 45/86 (52%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 IAFSPNNNXVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ 431
+A PNN VHIYK D W++ + L +HD V GIDW+ +N+IVT S DRN+YVW+
Sbjct: 25 VALCPNNTEVHIYKSLSQDHWERLHVLQKHDQIVSGIDWSSKSNKIVTVSHDRNSYVWSL 84
Query: 432 GDDGKWATTLVLLRINRAATCVKWSP 509
+ +W TLV+LR+NRAA CV+WSP
Sbjct: 85 -EGAEWVPTLVILRLNRAALCVQWSP 109
Score = 71.3 bits (167), Expect = 5e-13
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = +2
Query: 512 ENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDW 640
ENKFAVGSGA+ + ICY+E+ENNWWVSK I+K S+VTS+ W
Sbjct: 111 ENKFAVGSGAKTVCICYYEQENNWWVSKLIRKRHESSVTSVAW 153
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 291 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 428
Y++E N W H+ V + W PN + T S D V++
Sbjct: 128 YEQENNWWVSKLIRKRHESSVTSVAWHPNNVLLATTSTDGKCRVFS 173
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/81 (23%), Positives = 39/81 (48%)
Frame = +3
Query: 288 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 467
I+K G++++ + L H+ V + W + + + TCS D++ ++W + ++ VL
Sbjct: 100 IWKNYGSEFECISTLEGHENEVKSVSWNASGSCLATCSRDKSVWIWEVLEGNEYDCAAVL 159
Query: 468 LRINRAATCVKWSPWRTSLLS 530
+ V+W P L S
Sbjct: 160 TGHTQDVKMVQWHPTMDVLFS 180
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +3
Query: 300 EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYV-WTQGDDGKWATTLVLLRI 476
EGN++ L H V + W P + + +CS D V W++ DDG++ L
Sbjct: 149 EGNEYDCAAVLTGHTQDVKMVQWHPTMDVLFSCSYDNTIKVWWSEDDDGEYQCVQTLGES 208
Query: 477 NRAATCVKWS 506
N + WS
Sbjct: 209 NNGHSSTVWS 218
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 41.1 bits (92), Expect = 6e-04
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +3
Query: 297 KEGND--WKQTNNLVEHDLRVMGIDWAPNTNRI-VTCSV-DRNAYVWTQGDDGKWATTLV 464
KEGN W Q + +H + V I WAP+ + + C D N V++ DG W TT +
Sbjct: 86 KEGNQNQWTQAHVFTDHKVSVNSIAWAPHELGLSLACGASDGNISVFSARADGGWDTTKI 145
Query: 465 LLRINRAATCVKWSP 509
T V W+P
Sbjct: 146 DQAHPVGVTSVSWAP 160
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +3
Query: 297 KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 467
KEG W+ T L + V + W+ N + + N VW + DG+W V+
Sbjct: 245 KEGEQWEGTV-LKDFKTPVWRVSWSLTGNLLAVSDGNNNVTVWKESVDGEWEQVTVV 300
Score = 31.5 bits (68), Expect = 0.49
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Frame = +3
Query: 273 NNXVHIYKKEGNDWKQT--NNLVEHDLRVMGIDWAPNT----NRIVTCSVDRNAYVWTQG 434
++ V ++K WK L +H V + WAPN + I + S D +WT G
Sbjct: 185 DSTVKVWKFSNGSWKMDCFPALNKHTDWVRDVAWAPNLGLPKSTIASGSEDGKVIIWTIG 244
Query: 435 DDGKWATTLVLLRINRAATCVKWS 506
+G+ VL V WS
Sbjct: 245 KEGEQWEGTVLKDFKTPVWRVSWS 268
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = +3
Query: 330 LVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 503
L H V + WA P ++ +CS D +W +G+ +W V + + W
Sbjct: 52 LTGHRGPVWQVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVNSIAW 111
Query: 504 SPWRTSL 524
+P L
Sbjct: 112 APHELGL 118
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Frame = +3
Query: 297 KEGND--WKQTNNLVEHDLRVMGIDWAPNTNRI-VTC-SVDRNAYVWTQGDDGKWATTLV 464
KEGN W Q + +H V I WAP+ + + C S D N V+T DG W T+ +
Sbjct: 86 KEGNQNQWTQDHVFTDHKSSVNSIAWAPHDIGLSLACGSSDGNISVFTARADGGWDTSRI 145
Query: 465 LLRINRAATCVKWSP 509
T V W+P
Sbjct: 146 DQAHPVGVTSVSWAP 160
Score = 33.1 bits (72), Expect = 0.16
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Frame = +3
Query: 273 NNXVHIYKKEGNDWKQT--NNLVEHDLRVMGIDWAPNT----NRIVTCSVDRNAYVWTQG 434
+N V ++K WK L +H V + WAPN + I + S D +WT G
Sbjct: 185 DNTVKVWKLANGSWKMDCFPALQKHTDWVRDVAWAPNLGLPKSTIASGSQDGKVIIWTVG 244
Query: 435 DDGKWATTLVLLRINRAATCVKWS 506
+G+ VL V WS
Sbjct: 245 KEGEQWEGKVLKDFMTPVWRVSWS 268
Score = 32.3 bits (70), Expect = 0.28
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = +3
Query: 315 KQTNNLVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQGDDGKWATTLVLLRINRAA 488
+Q L H V + WA P I+ +CS D +W +G+ +W V +
Sbjct: 47 QQLATLTGHRGPVWEVAWAHPKYGSILASCSYDGQVILWKEGNQNQWTQDHVFTDHKSSV 106
Query: 489 TCVKWSP 509
+ W+P
Sbjct: 107 NSIAWAP 113
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +3
Query: 297 KEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 449
KEG W + L + V + W+ N + + N VW + DG+W
Sbjct: 245 KEGEQW-EGKVLKDFMTPVWRVSWSLTGNLLAVSDGNNNVTVWKEAVDGEW 294
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 37.1 bits (82), Expect = 0.010
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 339 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDG 443
H + + W+P++ R++T S D++A VW +DG
Sbjct: 95 HKGSIYAVSWSPDSKRVLTVSADKSAKVWEVAEDG 129
Score = 31.5 bits (68), Expect = 0.49
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +3
Query: 273 NNXVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 425
N ++ +E K NN++ H R+ + W+PN + T S+D V+
Sbjct: 377 NREAVVWDRETKQVK-LNNMLFHTARINSLAWSPNNKMVATGSIDTCVIVY 426
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 35.5 bits (78), Expect = 0.030
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 342 DLRVMGIDWAPNTNRIVTCSVDRNAYVW 425
DL+V +DW P NRIV+ S D VW
Sbjct: 3 DLQVYSLDWTPERNRIVSASQDGRLIVW 30
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 34.3 bits (75), Expect = 0.070
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = +3
Query: 288 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW--TQGDDGKWATTL 461
+++ D + + L H+ V + W + + + TC D++ ++W +D ++ T
Sbjct: 74 VWENFATDSESVSVLRGHESEVKSVSWNASGSLLATCGRDKSVWIWEIQPEEDDEFDTIA 133
Query: 462 VLLRINRAATCVKWSPWRTSLLS 530
VL + V W P L S
Sbjct: 134 VLTGHSEDVKMVLWHPTMDVLFS 156
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +3
Query: 288 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW-TQGDDGKWATTLV 464
I +E +++ L H V + W P + + +CS D +W ++ +DG +
Sbjct: 121 IQPEEDDEFDTIAVLTGHSEDVKMVLWHPTMDVLFSCSYDNTIKIWCSEDEDGDYNCVQT 180
Query: 465 LLRINRAATCVKWS 506
L +N + WS
Sbjct: 181 LSELNNGHSSTVWS 194
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 315 KQTNNLVEHDLRVMGIDWAPNTNRIV-TCSVDRNAYVWTQ 431
++ L H RV + W P + ++ +CS D+ +W Q
Sbjct: 11 EEVQKLEGHTDRVWNVAWNPAADGVIASCSADKTVRIWEQ 50
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 33.5 bits (73), Expect = 0.12
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +3
Query: 339 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 467
H + + W+P+ +++T S D++A +W D+G + L
Sbjct: 231 HKGSIYAVSWSPDGKQVLTVSADKSAKIWDISDNGSGSLNTTL 273
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 339 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 425
H +V +DW P NRIV+ S D VW
Sbjct: 64 HTGKVYSLDWTPERNRIVSASQDGRLIVW 92
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 339 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 425
H +V +DW P NRIV+ S D VW
Sbjct: 64 HTGKVYSLDWTPERNRIVSASQDGRLIVW 92
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 32.3 bits (70), Expect = 0.28
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = +3
Query: 330 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 509
LV H V + ++ + + T S D A +W DD K L + V WSP
Sbjct: 220 LVAHKNEVWFVQFSNSGKYLATASSDCTAIIWKVLDDNKVELKHTLESHQNPVSFVSWSP 279
Query: 510 WRTSLLS 530
T LL+
Sbjct: 280 DDTKLLT 286
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 32.3 bits (70), Expect = 0.28
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +3
Query: 309 DWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 425
+WK L H V+ ++W+P+ + + + S+D ++W
Sbjct: 107 NWKAVMTLRGHTADVVDLNWSPDDSMLASGSLDNTVHIW 145
Score = 28.3 bits (60), Expect = 4.6
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Frame = +3
Query: 273 NNXVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD----- 437
+N VHI+ T L H V G+ W P + I + S D+ +W D
Sbjct: 139 DNTVHIWNMRTG--MCTTVLRGHLSLVKGVTWDPIGSFIASQSDDKTVIIWRTSDWGMAH 196
Query: 438 --DGKWATTL 461
DG WA +L
Sbjct: 197 RTDGHWAKSL 206
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 31.9 bits (69), Expect = 0.37
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +3
Query: 324 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 503
+ LV H V G+ W+ + + + D VW ++ L L A + W
Sbjct: 292 SKLVGHKSEVCGLKWSHDDRELASGGNDNQLLVW---NNHSQQPILKLTEHTAAVKAITW 348
Query: 504 SPWRTSLLS 530
SP ++SLL+
Sbjct: 349 SPHQSSLLA 357
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 31.5 bits (68), Expect = 0.49
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 288 IYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 425
++ E N WK +L H V+ + W+P+ +++ SVD + +W
Sbjct: 34 LHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIW 80
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 31.5 bits (68), Expect = 0.49
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 288 IYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 425
++ E N WK +L H V+ + W+P+ +++ SVD + +W
Sbjct: 93 LHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIW 139
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 31.5 bits (68), Expect = 0.49
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 288 IYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 425
++ E N WK +L H V+ + W+P+ +++ SVD + +W
Sbjct: 93 LHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIW 139
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 31.5 bits (68), Expect = 0.49
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 339 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK---WSP 509
H V G+ W+ + ++ + D ++W + +TT L R+ + VK W P
Sbjct: 265 HTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCP 324
Query: 510 WRTSLLS 530
++ +LL+
Sbjct: 325 FQANLLA 331
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 31.5 bits (68), Expect = 0.49
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 339 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK---WSP 509
H V G+ W+ + ++ + D ++W + +TT L R+ + VK W P
Sbjct: 255 HTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCP 314
Query: 510 WRTSLLS 530
++ +LL+
Sbjct: 315 FQANLLA 321
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 31.5 bits (68), Expect = 0.49
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +3
Query: 339 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWS 506
H + W P ++ T S D+ +W+ +D + LVL + T V W+
Sbjct: 695 HKRIIWACSWNPFGHQFATSSRDKTVKIWSVENDARIKQILVLPPFGSSVTAVAWT 750
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 31.1 bits (67), Expect = 0.65
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +3
Query: 339 HDLRVMGIDWAPNTNRIV-TCSVDRNAYVWTQGD---DGKWATTLVLLRINRAATCVKWS 506
HD + +DW P+ N ++ T S D V+ + + +G + A CV+WS
Sbjct: 325 HDADLHCVDWNPHDNNLILTGSADNTVRVFDRRNLTSNGVGSPVYKFEGHRAAVLCVQWS 384
Query: 507 PWRTSLLSGQELD 545
P ++S+ D
Sbjct: 385 PDKSSVFGSSAED 397
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 31.1 bits (67), Expect = 0.65
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 303 GNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT-QGDD 440
G D+ +L H+ +V +D +++ I T S DR +WT G+D
Sbjct: 495 GRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLWTSSGND 541
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 30.7 bits (66), Expect = 0.86
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +3
Query: 249 KSIAFSPNNNXVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 428
K +A + ++ V I+ E + T EH + + + PN+ ++ T S D+ +W
Sbjct: 521 KLLASAGHDKKVFIWNMETLQVESTPE--EHAHIITDVRFRPNSTQLATSSFDKTIKIWD 578
Query: 429 QGDDGKWATTL 461
D G + T+
Sbjct: 579 ASDPGYFLRTI 589
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 30.7 bits (66), Expect = 0.86
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +3
Query: 249 KSIAFSPNNNXVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 428
K +A + ++ V I+ E + T EH + + + PN+ ++ T S D+ +W
Sbjct: 523 KLLASAGHDKKVFIWNMETLQVESTPE--EHAHIITDVRFRPNSTQLATSSFDKTIKIWD 580
Query: 429 QGDDGKWATTL 461
D G + T+
Sbjct: 581 ASDPGYFLRTI 591
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 30.7 bits (66), Expect = 0.86
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +3
Query: 249 KSIAFSPNNNXVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 428
K +A + ++ V I+ E + T EH + + + PN+ ++ T S D+ +W
Sbjct: 523 KLLASAGHDKKVFIWNMETLQVESTPE--EHAHIITDVRFRPNSTQLATSSFDKTIKIWD 580
Query: 429 QGDDGKWATTL 461
D G + T+
Sbjct: 581 ASDPGYFLRTI 591
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 30.7 bits (66), Expect = 0.86
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +3
Query: 249 KSIAFSPNNNXVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 428
K +A + ++ V I+ E + T EH + + + PN+ ++ T S D+ +W
Sbjct: 523 KLLASAGHDKKVFIWNMETLQVESTPE--EHAHIITDVRFRPNSTQLATSSFDKTIKIWD 580
Query: 429 QGDDGKWATTL 461
D G + T+
Sbjct: 581 ASDPGYFLRTI 591
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 30.7 bits (66), Expect = 0.86
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +3
Query: 249 KSIAFSPNNNXVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 428
K +A + ++ V I+ E + T EH + + + PN+ ++ T S D+ +W
Sbjct: 523 KLLASAGHDKKVFIWNMETLQVESTPE--EHAHIITDVRFRPNSTQLATSSFDKTIKIWD 580
Query: 429 QGDDGKWATTL 461
D G + T+
Sbjct: 581 ASDPGYFLRTI 591
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 324 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWAT 455
+ L H +V I + +T+ ++T S D+ +W +DG + +
Sbjct: 258 STLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGCSEDGNYTS 301
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +3
Query: 252 SIAFSPNNNXVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ 431
+++F+ ++ IY + + + H V + W P + + +CS D A +W
Sbjct: 418 NVSFATSSTDSMIYLCKIGETRPAKTFTGHQGEVNCVKWDPTGSLLASCSDDSTAKIW-- 475
Query: 432 GDDGKWATTLVLLRIN-RAATCVKWSP 509
+ K +T + LR + + ++WSP
Sbjct: 476 --NIKQSTFVHDLREHTKEIYTIRWSP 500
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +3
Query: 324 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWA 452
+ L H +V + + +++ ++T S D+ +W DG +A
Sbjct: 258 STLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYA 300
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +3
Query: 324 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWA 452
+ L H +V + + +++ ++T S D+ +W DG +A
Sbjct: 258 STLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGNYA 300
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Frame = +3
Query: 306 NDWKQTNNLVE----HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLR 473
ND + +++VE H V G+ W+ + N+ + D ++W + T L R
Sbjct: 236 NDVRIRSSIVETYLGHTEEVCGLKWSESGNKQASGGNDNVVHIWDRSLASSKQTRQWLHR 295
Query: 474 INRAATCVK---WSPWRTSLLS 530
V+ W P++ SLL+
Sbjct: 296 FEEHTAAVRALAWCPFQASLLA 317
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +3
Query: 315 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 494
K + + H ++ I W+ N NR+++ SVD + +W G + L + N T
Sbjct: 347 KPLHEFLGHSGDILDISWSKN-NRLLSASVDNSVRLWQIGCE----DCLGIFSHNNYVTS 401
Query: 495 VKWSP 509
V+++P
Sbjct: 402 VQFNP 406
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +3
Query: 315 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 494
K + + H ++ I W+ N NR+++ SVD + +W G + L + N T
Sbjct: 347 KPLHEFLGHSGDILDISWSKN-NRLLSASVDNSVRLWQIGCE----DCLGIFSHNNYVTS 401
Query: 495 VKWSP 509
V+++P
Sbjct: 402 VQFNP 406
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 318 QTNNLVE-HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 494
QT ++E H V + ++ N + + S D+ A +W DG + L+ ++
Sbjct: 265 QTAQILESHTDEVWFLQFSHNGKYLASSSKDQTAIIWEISADGHISLKHTLVGHHKPVIA 324
Query: 495 VKWSP 509
+ WSP
Sbjct: 325 ILWSP 329
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 315 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDG 443
K L EH + I ++P+ R+ T S D+ VW + G
Sbjct: 684 KPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVWDADNKG 726
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +3
Query: 288 IYKKEGN--DWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 425
+Y+K+G+ + + L H V + ++PN+ +I+T S D + VW
Sbjct: 269 VYQKDGSVKEVSRVMQLKGHKSAVTWLCFSPNSEQIITASKDGSIRVW 316
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Frame = +3
Query: 324 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK- 500
+ L H + G+ W+ + + + D +VW Q +T +LR A VK
Sbjct: 286 SKLKGHKSEICGLKWSSDNRELASGGNDNKLFVWNQ------HSTQPVLRFCEHAAAVKA 339
Query: 501 --WSPWRTSLLS 530
WSP LL+
Sbjct: 340 IAWSPHHFGLLA 351
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 360 IDWAPNTNRIVTCSVDRNAYVW 425
+DW PN N I T S D+ +W
Sbjct: 505 VDWHPNCNYIATGSSDKTVRLW 526
>At1g09750.1 68414.m01094 chloroplast nucleoid DNA-binding
protein-related contains Pfam profile PF00026:
Eukaryotic aspartyl protease;b similar to CND41,
chloroplast nucleoid DNA binding protein (GI:2541876)
[Nicotiana tabacum]
Length = 449
Score = 28.3 bits (60), Expect = 4.6
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = -3
Query: 518 CSPWRPFHASRCSVDTQKN-KSSCPFPIISLSPDVSITVNRTRNNTVGVGSPINPHHSKV 342
CSP+ P H S +DT + SS + LS S+ + + +V V S H
Sbjct: 48 CSPFAPTHVSASVIDTVLHMASSDSHRLTYLS---SLVAGKPKPTSVPVASGNQLHIGNY 104
Query: 341 VFHKVVCLLPVISFLFVYVNXIIVW*ECN 255
V + P + F+ + + VW C+
Sbjct: 105 VVRAKLGTPPQLMFMVLDTSNDAVWLPCS 133
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = +3
Query: 333 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK---W 503
V H V G+ W+ + ++ + D ++W + T L R V+ W
Sbjct: 233 VGHTEEVCGLKWSESGKKLASGGNDNVVHIWDRSLASSNPTRQWLHRFEEHTAAVRALAW 292
Query: 504 SPWRTSLLS 530
P++ SLL+
Sbjct: 293 CPFQASLLA 301
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = +3
Query: 339 HDLRVMGIDWAPNT-NRIVTCSVDRNAYVWTQGD---DGKWATTLVLLRINRAATCVKWS 506
HD + +DW P+ N I+T S D ++ + +G + A CV+WS
Sbjct: 336 HDADLHCVDWNPHDDNLILTGSADNTVRLFDRRKLTANGVGSPIYKFEGHKAAVLCVQWS 395
Query: 507 PWRTSLLSGQELD 545
P ++S+ D
Sbjct: 396 PDKSSVFGSSAED 408
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 339 HDLRVMGIDWAPN-TNRIVTCSVDRNAYVW 425
HD V +DW+P+ ++ T S D +W
Sbjct: 380 HDFEVTAVDWSPSEIGKVATASDDFTVRLW 409
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 327 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 425
+L H L VM ID + + IVT S D+N +W
Sbjct: 577 SLYGHKLPVMCIDISSDGELIVTGSQDKNLKIW 609
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 306 NDWKQTNNLVEHDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQG 434
N W T H VM + + P +TN + S+DR +W G
Sbjct: 130 NGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLG 173
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 306 NDWKQTNNLVEHDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQG 434
N W T H VM + + P +TN + S+DR +W G
Sbjct: 130 NGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLG 173
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 306 NDWKQTNNLVEHDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQG 434
N W T H VM + + P +TN + S+DR +W G
Sbjct: 130 NGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLG 173
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,188,950
Number of Sequences: 28952
Number of extensions: 299731
Number of successful extensions: 897
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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