Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0957
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 79 4e-16
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 69 4e-13
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 69 6e-13
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 69 8e-13
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 67 2e-12
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 65 1e-11
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 61 1e-10
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 61 2e-10
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 52 7e-08
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 50 4e-07
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 36 0.005
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 34 0.020
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 31 0.14
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 30 0.33
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 29 0.76
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 26 4.1
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 26 4.1
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 4.1
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 26 5.4
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po... 26 5.4
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 25 7.1
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 25 7.1
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 25 7.1
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz... 25 7.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.4
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 9.4
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 9.4
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 25 9.4
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 79.4 bits (187), Expect = 4e-16
Identities = 38/109 (34%), Positives = 68/109 (62%)
Frame = +2
Query: 320 RREHLYKILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDSNTIIRLQLW 499
+++HL K++++GE G GKTSI+ +YV++ FS+ Y+ATIG DF K + D + ++ LQLW
Sbjct: 4 KKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVD-DKVVTLQLW 62
Query: 500 DIADKSASGT*RVFITRKQWGAFIVFDVSRVATFDAVVKWKNDLGCESS 646
D A + + V R +V+DV+ +F+ + W+++ ++S
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQAS 111
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 69.3 bits (162), Expect = 4e-13
Identities = 32/102 (31%), Positives = 60/102 (58%)
Frame = +2
Query: 326 EHLYKILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDSNTIIRLQLWDI 505
++L+K+L+IG+ G GK+ ++ R+ +++ Y +TIGVDF ++ + T ++LQ+WD
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKT-VKLQIWDT 64
Query: 506 ADKSASGT*RVFITRKQWGAFIVFDVSRVATFDAVVKWKNDL 631
A + T R G IV+DV+ +F+ V +W ++
Sbjct: 65 AGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEI 106
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 68.9 bits (161), Expect = 6e-13
Identities = 36/102 (35%), Positives = 56/102 (54%)
Frame = +2
Query: 335 YKILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDSNTIIRLQLWDIADK 514
+K++ +GE GKTS+I R+++ F Y+ATIG+DF K + + T +RLQLWD A +
Sbjct: 12 FKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQ 70
Query: 515 SASGT*RVFITRKQWGAFIVFDVSRVATFDAVVKWKNDLGCE 640
+ R A IV+D++ +F KW D+ E
Sbjct: 71 ERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAE 112
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 68.5 bits (160), Expect = 8e-13
Identities = 34/103 (33%), Positives = 62/103 (60%)
Frame = +2
Query: 338 KILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDSNTIIRLQLWDIADKS 517
K++++G+ G GKT ++ ++V+Q FS+ Y+ATIG DF K + D + ++ LQLWD A +
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVD-DKLVTLQLWDTAGQE 68
Query: 518 ASGT*RVFITRKQWGAFIVFDVSRVATFDAVVKWKNDLGCESS 646
+ + R IV++V+ +FD+V W+ + ++S
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTS 111
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 67.3 bits (157), Expect = 2e-12
Identities = 33/102 (32%), Positives = 61/102 (59%)
Frame = +2
Query: 326 EHLYKILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDSNTIIRLQLWDI 505
++L+K ++IG+ G GK++++ R+ F+ ++TIGV+FA + + D N I+ Q+WD
Sbjct: 8 DYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLD-NKKIKAQIWDT 66
Query: 506 ADKSASGT*RVFITRKQWGAFIVFDVSRVATFDAVVKWKNDL 631
A + R GA IV+D+++ ++FD V +W +L
Sbjct: 67 AGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKEL 108
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 64.9 bits (151), Expect = 1e-11
Identities = 31/98 (31%), Positives = 54/98 (55%)
Frame = +2
Query: 326 EHLYKILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDSNTIIRLQLWDI 505
++L K+L+IG+ G GK+ ++ R+ F+ + TIG+DF ++ + D I+LQ+WD
Sbjct: 7 DYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKR-IKLQIWDT 65
Query: 506 ADKSASGT*RVFITRKQWGAFIVFDVSRVATFDAVVKW 619
A + T R G +++DV+ +FD V W
Sbjct: 66 AGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTW 103
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 61.3 bits (142), Expect = 1e-10
Identities = 27/98 (27%), Positives = 53/98 (54%)
Frame = +2
Query: 338 KILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDSNTIIRLQLWDIADKS 517
K++++G+ GK+S++ R+V F + +TIG F + L D NT ++L++WD A +
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 518 ASGT*RVFITRKQWGAFIVFDVSRVATFDAVVKWKNDL 631
+ R A +V+D+++ A+ + W +L
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKEL 113
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 60.9 bits (141), Expect = 2e-10
Identities = 31/108 (28%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Frame = +2
Query: 317 ERREHLYKILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLN---WDSNTIIR 487
E ++L KI++ G GTGK+ +++R+V + T+G+DFA ++++ + I+
Sbjct: 4 ESYDYLVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIK 63
Query: 488 LQLWDIADKSASGT*RVFITRKQWGAFIVFDVSRVATFDAVVKWKNDL 631
LQ+WD A + + R GA +V+DV+ +F+ + W +D+
Sbjct: 64 LQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDI 111
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 52.0 bits (119), Expect = 7e-08
Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Frame = +2
Query: 335 YKILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDSN-TIIRLQLWDIAD 511
+K++++G+ GTGKT+ +KR++ F + Y AT+GV+ + L++ +N I +WD A
Sbjct: 10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVE--VHPLHFHTNFGEICFNVWDTAG 67
Query: 512 KSASGT*R-VFITRKQWGAFIVFDVSRVATFDAVVKWKNDL 631
+ G R + + Q G I+FDV+ T+ V W DL
Sbjct: 68 QEKLGGLRDGYYIQGQCG-IIMFDVTSRITYKNVPHWWRDL 107
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 49.6 bits (113), Expect = 4e-07
Identities = 26/94 (27%), Positives = 47/94 (50%)
Frame = +2
Query: 338 KILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDSNTIIRLQLWDIADKS 517
K+ +IG+ GKTS++ YV F + T+GV+F K ++ NT I +WD+ +
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTIS-IRNTEITFSIWDLGGQR 70
Query: 518 ASGT*RVFITRKQWGAFIVFDVSRVATFDAVVKW 619
+ +FD+SR +T +++ +W
Sbjct: 71 EFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEW 104
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 35.9 bits (79), Expect = 0.005
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +2
Query: 338 KILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDSNTIIRLQLWDIA 508
K++V+G+ G GKT ++ + F + Y T+ ++ + ++ +I L LWD A
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTA 72
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 33.9 bits (74), Expect = 0.020
Identities = 23/92 (25%), Positives = 43/92 (46%)
Frame = +2
Query: 335 YKILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDSNTIIRLQLWDIADK 514
YK++V+G+ G GK+++ + + F Y TI D K D + L + D A +
Sbjct: 9 YKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTI-EDSYRKKCEIDGEGAL-LDVLDTAGQ 66
Query: 515 SASGT*RVFITRKQWGAFIVFDVSRVATFDAV 610
R R G +V++++ ++FD +
Sbjct: 67 EEYSAMREQYMRTGEGFLLVYNITSRSSFDEI 98
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 31.1 bits (67), Expect = 0.14
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Frame = +2
Query: 338 KILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDSNTIIRLQLWDIADKS 517
K +V+G+ GKT ++ Y F Y T+ ++A+ V+ D L L+D A +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEP--YTLGLFDTAGQE 62
Query: 518 ASGT*RVFITRKQWGAFIV-FDVSRVATFDAV-VKW 619
R ++ Q F+V F V+ A+F+ V KW
Sbjct: 63 DYDRLRP-LSYPQTDVFLVCFSVTSPASFENVKEKW 97
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 29.9 bits (64), Expect = 0.33
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +2
Query: 338 KILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDSNTIIRLQLWDIA 508
K++V+G+ GKTS++ + +F Y T+ ++ + D + ++L LWD A
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENY-VSDCRVDGKS-VQLALWDTA 64
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 28.7 bits (61), Expect = 0.76
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 338 KILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKV 457
+I V+G GK+S+ +YV F + Y TI F+ +
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNI 47
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 26.2 bits (55), Expect = 4.1
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Frame = +2
Query: 338 KILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDSNTIIRLQLWDIADKS 517
K++++G+ GKT ++ + F + Y T+ ++ V D I L LWD A +
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADV-EVDGRH-IELALWDTAGQE 65
Query: 518 ASGT*RVFITRKQWGAFIVFDVSRVATFDAV-VKWKNDL 631
R I F V + D V KW +++
Sbjct: 66 DYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEV 104
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 342 SSSSANWVQGRLP*SNDMSTSSSVNTIEQPSA 437
SS ++N V+ LP SN S SSS + +P+A
Sbjct: 240 SSLNSNIVKPPLPPSNVQSNSSSSENVPKPNA 271
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 317 ERREHLYKILVIGELGTGKTSIIKRYVHQFFSQHYRATIG 436
E +E+ ILV GE G GKT KR + + T+G
Sbjct: 159 ENKEN-QSILVTGESGAGKTENTKRIIQYLAAIASSTTVG 197
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -3
Query: 610 DSVERGHSGNVEHYKRAPLLPCNKHASCSRSALVCYIP*LQSYYGIGVPIQYFQ 449
D E G + N++HY RA + +RS+ VC S YG+G ++ +
Sbjct: 102 DPFELGENFNLKHYLRAYKDSLQRDDIITRSSGVCMRD--HSVYGVGSGYEFLK 153
>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.8 bits (54), Expect = 5.4
Identities = 17/72 (23%), Positives = 28/72 (38%)
Frame = -1
Query: 630 KSFFHLTTASNVATLETSNTINAPHCFLVINTRHVPEALLSAISHSCNLIMVLESQFSTF 451
K+FF T + S TI+ H FLV + EA+ ++ ++ E F
Sbjct: 19 KTFFDKYTDRMGSAFACSGTIDKDHIFLVWSVAVYAEAMADSLRYTSKFERKFEHVFQAL 78
Query: 450 SAKSTPMVAL*C 415
+P+ C
Sbjct: 79 KKYWSPVFNACC 90
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 521 KRSCLLYPIVAILLWYWSPNSVLSVRN 441
KR CL + IV + W WS SV +R+
Sbjct: 138 KRLCLSWAIVGMNAWVWS--SVFHIRD 162
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 341 ILVIGELGTGKTSIIKRYVHQFFSQHYRATI-GVDFALKVLNWDSNTIIR 487
I+V+G G+GKT+ +++ S++ I +D A++ L +++N IR
Sbjct: 11 IIVVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLDPAVRNLPYEANIDIR 60
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 25.4 bits (53), Expect = 7.1
Identities = 7/21 (33%), Positives = 17/21 (80%)
Frame = +2
Query: 341 ILVIGELGTGKTSIIKRYVHQ 403
+L++ E G+GKT+ + +++H+
Sbjct: 437 LLIVAETGSGKTTQLPQFLHE 457
>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 375
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 315 LNAGSIYIRSSSSANWV 365
+NAGS++IR+S W+
Sbjct: 249 INAGSLFIRNSEVGRWI 265
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +2
Query: 341 ILVIGELGTGKTSIIK 388
+L++GE GTGKT+ I+
Sbjct: 470 LLLVGETGTGKTTTIQ 485
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.0 bits (52), Expect = 9.4
Identities = 7/21 (33%), Positives = 18/21 (85%)
Frame = +2
Query: 341 ILVIGELGTGKTSIIKRYVHQ 403
++V+GE G+GKT+ + +++++
Sbjct: 511 LIVVGETGSGKTTQLAQFLYE 531
>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 128
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 167 CV*ILSRKFY*ILHRNCLIGFIFVFLDVVSRIM 265
CV + K Y I+HR I IF+FL+ V I+
Sbjct: 19 CVRVAKEK-YKIIHRLLYISIIFLFLNYVVDIV 50
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 338 KILVIGELGTGKTSIIKRYVHQ 403
KIL+ G+L GK+++ VH+
Sbjct: 156 KILITGDLNAGKSTLCNALVHK 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,044
Number of Sequences: 5004
Number of extensions: 53364
Number of successful extensions: 190
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -