Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0957
         (648 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            54   3e-09
AY873992-1|AAW71999.1|  259|Anopheles gambiae nanos protein.           27   0.68 
AY583530-1|AAS93544.1|  260|Anopheles gambiae NOS protein protein.     27   0.68 
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    26   1.2  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    24   3.6  

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 54.4 bits (125), Expect = 3e-09
 Identities = 27/104 (25%), Positives = 54/104 (51%)
 Frame = +2

Query: 335 YKILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDSNTIIRLQLWDIADK 514
           +K++++GE   GK+S++ R+V   F ++  +TIG  F  + L  D +T ++ ++WD A +
Sbjct: 25  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCID-DTTVKFEIWDTAGQ 83

Query: 515 SASGT*RVFITRKQWGAFIVFDVSRVATFDAVVKWKNDLGCESS 646
               +      R    A +V+D+    +F     W  +L  ++S
Sbjct: 84  ERYHSLAPMYYRGAQAAIVVYDIQNSDSFARAKTWVKELQRQAS 127


>AY873992-1|AAW71999.1|  259|Anopheles gambiae nanos protein.
          Length = 259

 Score = 26.6 bits (56), Expect = 0.68
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 348 TRILYKCSRRSALADACELPACCFCFGD 265
           TR L KC  +S     CEL  C FCF +
Sbjct: 139 TRPLRKCRNKST----CELDHCVFCFNN 162


>AY583530-1|AAS93544.1|  260|Anopheles gambiae NOS protein protein.
          Length = 260

 Score = 26.6 bits (56), Expect = 0.68
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 348 TRILYKCSRRSALADACELPACCFCFGD 265
           TR L KC  +S     CEL  C FCF +
Sbjct: 140 TRPLRKCRNKST----CELDHCVFCFNN 163


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
 Frame = +2

Query: 338 KILVIGELGTGKTSIIKRYVHQFFSQHYRATIGVDFALKVLNWDSNTIIRLQLWDIADKS 517
           K +V+G+   GKT ++  Y    F   Y  T   +++  ++       + L LWD A + 
Sbjct: 8   KCVVVGDGTVGKTCMLISYTTDSFPGEYVPTSFDNYSAPMV--VDGVQVSLGLWDTAGQE 65

Query: 518 ASGT*RVFITRKQWGAFIV-FDVSRVATFDAVV-KW 619
                R  ++  Q   F++ + V+  ++F+ V  KW
Sbjct: 66  DYDRLRP-LSYPQTDVFLICYSVASPSSFENVTSKW 100


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 227  IRSDNFDEVFNRIFSIKFKHIALQTRRSV 141
            +RS N +E+ +R+F  K K   L T+ ++
Sbjct: 1063 VRSTNGEEIVSRLFVSKSKVTPLATKHTI 1091


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 656,571
Number of Sequences: 2352
Number of extensions: 12478
Number of successful extensions: 26
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63977715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)