Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0957
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   1.9  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   4.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 642 LSHPK-SFFHLTTASNVATLETSNTIN 565
           L+ PK S   LTT  NV+ L T+NT N
Sbjct: 707 LNVPKESTQSLTTTGNVSYLTTNNTSN 733



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -1

Query: 396 TYRLI--MEVFPVPNSPMTRILYKCSRRSA 313
           T RL+  +E+   P S   R  Y+C  RSA
Sbjct: 40  TERLLPYVEIIEQPASKALRFRYECEGRSA 69


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 228 LFLCFLTLCQGLCRRNKSNTPAVHTHRLVLNAGSIYI 338
           L +C L L   +C R   N   V  + L+L   SI I
Sbjct: 114 LHICMLELGHEVCGRFYGNIQTVXNNWLLLEGHSIGI 150


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -1

Query: 396 TYRLI--MEVFPVPNSPMTRILYKCSRRSA 313
           T RL+  +E+   P S   R  Y+C  RSA
Sbjct: 40  TERLLPYVEIIEQPASKALRFRYECEGRSA 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,021
Number of Sequences: 438
Number of extensions: 3644
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)