Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0954
         (643 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     26   0.23 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    26   0.23 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           26   0.23 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   4.9  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 379 RQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAF 486
           RQ  PW RKV   G    ++ TF P ++  R R A+
Sbjct: 208 RQIYPWMRKVHVAGA---SNGTFAPGMEPKRQRTAY 240


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 379 RQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAF 486
           RQ  PW RKV   G    ++ TF P ++  R R A+
Sbjct: 208 RQIYPWMRKVHVAGA---SNGTFAPGMEPKRQRTAY 240



 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 545 GDTLQNLHKARHDLRECGVAHAARTHIDTL 634
           G+ + ++   RH +   G +HA   H D L
Sbjct: 343 GENMMDMSLTRHQISSMGHSHAHPMHHDML 372


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 379 RQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAF 486
           RQ  PW RKV   G    ++ TF P ++  R R A+
Sbjct: 208 RQIYPWMRKVHVAGA---SNGTFAPGMEPKRQRTAY 240



 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 545 GDTLQNLHKARHDLRECGVAHAARTHIDTL 634
           G+ + ++   RH +   G +HA   H D L
Sbjct: 343 GENMMDMSLTRHQISSMGHSHAHPMHHDML 372


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 561 FCKVSPCSEGTFYSAYRSGVEST 493
           FC  SPC  G   +   +G + T
Sbjct: 341 FCATSPCQNGGVCTTIHAGHKCT 363


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,157
Number of Sequences: 336
Number of extensions: 3543
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)