Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0954
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    27   3.0  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    25   7.0  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    25   7.0  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   7.0  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    25   9.3  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     25   9.3  

>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 27  IESREPAPPHDLSQLESRKALSSHPSYLAYSSTIFPGRRRPI*LYSPTTRLFT 185
           + +  PAPP+  +        SS PS    +S  FP       L+SPT R  T
Sbjct: 233 LSTSTPAPPNS-NNANPSTLFSSIPSSRHTTSNHFPSNSAQSSLFSPTARPLT 284


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = -3

Query: 635 GGCLCVCGPREQHHT-RVSHDG 573
           G  LCVC P+  HH     HDG
Sbjct: 340 GPVLCVCVPKATHHIFSGGHDG 361


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 504 PQICKRSKMSLRNKVTLYK 560
           P ICK ++++L+N +TL K
Sbjct: 63  PTICKGNEIALKNNITLEK 81


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 48  PPHDLSQLESRKALSSHPSYLAYSSTIFPGRRRPI*LYSPT 170
           PPH+ SQ +S    +  PS+ +      P   +P  +  PT
Sbjct: 508 PPHNYSQAQSPNLATPSPSFSSLPDVSLPPIVKPNLMSEPT 548


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 2/127 (1%)
 Frame = +3

Query: 54  HDLSQLESRKALSSHPSYLAYSSTIFPGRRRPI*LYSPTTRLFTILVEISP*SRRSFRA- 230
           H +     R+ LS  P  LA    +   R     +Y      +T+  E+ P S  +++A 
Sbjct: 166 HGIQPPPKRRTLSPPPRRLADPVVVGSSRYVEEEVYRRPP--YTLASEV-PSSASAYQAG 222

Query: 231 -QP*P*DSGPKMAHRHQPSEKYCGAISEGKLHTDFLPD*EEESHTPDYSL*TTHTLGQEG 407
               P  S P+++H     +   G  S G     F+P     SH+P       H+L    
Sbjct: 223 YSSYPVRSSPQLSHE----DTRHGIASSGSTRYPFVPANTRASHSPSLLEPYAHSLPSSV 278

Query: 408 QVPGRYP 428
              G YP
Sbjct: 279 APVGAYP 285


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 539 EQGDTLQNLHKARHDLRECGVAHAARTHI-DTL 634
           E  DTLQNL K  H ++   V    + ++ DTL
Sbjct: 431 EASDTLQNLAKLVHSMQSMAVPKEIQMYVKDTL 463


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,902
Number of Sequences: 5004
Number of extensions: 56118
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)