Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0954
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171     28   5.5  
02_05_0783 + 31723330-31723585,31723683-31723857,31723953-317241...    28   7.2  
09_02_0306 + 7126178-7127398                                           27   9.6  
02_05_0173 + 26475074-26476108                                         27   9.6  

>03_04_0231 + 19050105-19050567,19051376-19052648,19052743-19054171
          Length = 1054

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 42  PAPPHDLSQLESRKALSSHPSYLAYSSTIFPGRRRPI*LYSP 167
           P P  + +++  +K +  +PS L+ S   F GR+    LYSP
Sbjct: 240 PRPSKETARMIKKKLVEENPSVLSGSQPAFDGRKN---LYSP 278


>02_05_0783 +
           31723330-31723585,31723683-31723857,31723953-31724166,
           31724388-31725032,31725199-31725335,31725440-31725554
          Length = 513

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 473 TEPRLFSVDSTPDL*AE*NVPSEQGDTLQNLHKAR-HDLREC 595
           T+P +F  D    +    +VPS +G+T+Q+ H+ +  DL  C
Sbjct: 87  TKPSIFDADEYVSVSNVSDVPSSEGNTMQDEHRNKGKDLLYC 128


>09_02_0306 + 7126178-7127398
          Length = 406

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -3

Query: 557 VKCHLVPKGHFTPLTDLG*SLPRINAARSRTDFICGRNVIDASRVTPRYL 408
           V CH  P   + P+ +   SLP          F+ GR + +  RV+P ++
Sbjct: 75  VVCHSEPGAWYPPMYE---SLPCPPTGYDEPAFVIGRTMFETDRVSPEHV 121


>02_05_0173 + 26475074-26476108
          Length = 344

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 49  LPTTSHSWSPARLCPLTPPI*LIRQRYSPVAADPFSFIRRR 171
           LP TSH+W+ A       P  L++ + +  AADP  F + R
Sbjct: 119 LPPTSHAWAAAE---AVHPAALLQAQTAAAAADPNDFRKYR 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,606,634
Number of Sequences: 37544
Number of extensions: 444393
Number of successful extensions: 1260
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)