Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0954
(643 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 50 3e-06
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 50 3e-06
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 48 8e-06
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 48 8e-06
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 45 1e-04
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 42 5e-04
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 41 0.001
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 39 0.005
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 39 0.007
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 37 0.027
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 36 0.035
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 36 0.035
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 31 1.3
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 31 1.3
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 31 1.3
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 31 1.3
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 31 1.3
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 31 1.3
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 31 1.3
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 31 1.3
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 31 1.3
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 31 1.3
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 30 3.1
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 30 3.1
Z29571-1|CAA82675.1| 122|Drosophila melanogaster unknown protein. 29 7.1
AE014134-181|AAF51435.1| 122|Drosophila melanogaster CG11297-PA... 29 7.1
BT023790-1|AAZ41799.1| 828|Drosophila melanogaster GH11852p pro... 28 9.4
AE014298-1596|AAF48032.1| 943|Drosophila melanogaster CG1737-PA... 28 9.4
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 50.0 bits (114), Expect = 3e-06
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Frame = +2
Query: 5 LSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPPTH--------LAL 160
L R+F V+G +SS +P+ AGVPQG +D+P P +A
Sbjct: 619 LEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLIAT 678
Query: 161 FADDTTVYYSSRNKSLIAKKLQSAALALGQWSEN 262
+ADDT V S++ LQ A QW+EN
Sbjct: 679 YADDTAVLTKSKSILAATSGLQEYLDAFQQWAEN 712
Score = 31.9 bits (69), Expect = 0.76
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +1
Query: 361 PPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSV----RDRAAFILGRLYPRSVSGVK 528
P ++L + I + KYLG+TLD +TF HI ++ R + A + + PR+ +
Sbjct: 735 PGVSLNGRLIRHHQAYKYLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPRNKLSLG 794
Query: 529 C 531
C
Sbjct: 795 C 795
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 50.0 bits (114), Expect = 3e-06
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Frame = +2
Query: 5 LSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPPTH--------LAL 160
L R+F V+G +SS +P+ AGVPQG +D+P P +A
Sbjct: 421 LEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLIAT 480
Query: 161 FADDTTVYYSSRNKSLIAKKLQSAALALGQWSEN 262
+ADDT V S++ LQ A QW+EN
Sbjct: 481 YADDTAVLTKSKSILAATSGLQEYLDAFQQWAEN 514
Score = 31.9 bits (69), Expect = 0.76
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +1
Query: 361 PPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSV----RDRAAFILGRLYPRSVSGVK 528
P ++L + I + KYLG+TLD +TF HI ++ R + A + + PR+ +
Sbjct: 537 PGVSLNGRLIRHHQAYKYLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPRNKLSLG 596
Query: 529 C 531
C
Sbjct: 597 C 597
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 48.4 bits (110), Expect = 8e-06
Identities = 27/75 (36%), Positives = 41/75 (54%)
Frame = +2
Query: 5 LSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPPTHLALFADDTTVY 184
L++R F + ++S+ R L AGVPQG +DIP++ L+LFADD VY
Sbjct: 643 LTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLFNIFTHDIPQATNCVLSLFADDAAVY 702
Query: 185 YSSRNKSLIAKKLQS 229
+ + S I + +QS
Sbjct: 703 SAGFSYSEINQSMQS 717
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/84 (28%), Positives = 38/84 (45%)
Frame = +1
Query: 256 RKWRIDINPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDA 435
+KW+I INP K+ A+ F + + PI W ++YLG+ D
Sbjct: 727 KKWKIKINPNKTNAIFFTKRRKPRYLPDRQ-------LRILDSPIQWVDNIRYLGIIFDK 779
Query: 436 SMTFRPHIKSVRDRAAFILGRLYP 507
+TF+ HI + + I+ LYP
Sbjct: 780 KLTFKYHINNTIMKVNKIICTLYP 803
Score = 35.1 bits (77), Expect = 0.082
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +3
Query: 504 PQICKRSKMSLRNKVTLYKTCIRPVMTYASVV 599
P I ++SK+S+ NK+ ++KT P++ Y S V
Sbjct: 803 PLINRKSKLSISNKIIIFKTIFNPILMYGSPV 834
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 48.4 bits (110), Expect = 8e-06
Identities = 27/75 (36%), Positives = 41/75 (54%)
Frame = +2
Query: 5 LSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPPTHLALFADDTTVY 184
L++R F + ++S+ R L AGVPQG +DIP++ L+LFADD VY
Sbjct: 591 LTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLFNIFTHDIPQATNCVLSLFADDAAVY 650
Query: 185 YSSRNKSLIAKKLQS 229
+ + S I + +QS
Sbjct: 651 SAGFSYSEINQSMQS 665
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/84 (28%), Positives = 38/84 (45%)
Frame = +1
Query: 256 RKWRIDINPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDA 435
+KW+I INP K+ A+ F + + PI W ++YLG+ D
Sbjct: 675 KKWKIKINPNKTNAIFFTKRRKPRYLPDRQ-------LRILDSPIQWVDNIRYLGIIFDK 727
Query: 436 SMTFRPHIKSVRDRAAFILGRLYP 507
+TF+ HI + + I+ LYP
Sbjct: 728 KLTFKYHINNTIMKVNKIICTLYP 751
Score = 35.1 bits (77), Expect = 0.082
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +3
Query: 504 PQICKRSKMSLRNKVTLYKTCIRPVMTYASVV 599
P I ++SK+S+ NK+ ++KT P++ Y S V
Sbjct: 751 PLINRKSKLSISNKIIIFKTIFNPILMYGSPV 782
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 44.8 bits (101), Expect = 1e-04
Identities = 25/74 (33%), Positives = 33/74 (44%)
Frame = +1
Query: 256 RKWRIDINPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDA 435
R+W I IN +KS V F PP+ + P+P KYLGV LD
Sbjct: 706 RRWNIGINSSKSNNVCFTLKR-----------RTPPPVYIEEVPVPQPNAAKYLGVLLDR 754
Query: 436 SMTFRPHIKSVRDR 477
+TF H+ +R R
Sbjct: 755 RLTFSKHVTDIRTR 768
Score = 39.5 bits (88), Expect = 0.004
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Frame = +2
Query: 5 LSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSP-----PTHLALFAD 169
L R F R S+ + AGVPQG +D+P+ + LA FAD
Sbjct: 617 LEGRRFAVRFHSAISTEHNVAAGVPQGSVLGPLLYCLYSHDMPQPDVSLYGKSMLATFAD 676
Query: 170 DTTVYYSSRNKSLIAKKLQSAALALGQWS 256
D V Y SR + A +Q A +W+
Sbjct: 677 DVCVTYRSRCEHDAADGIQDFAYRFSEWA 705
Score = 29.5 bits (63), Expect = 4.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 510 ICKRSKMSLRNKVTLYKTCIRPVMTY 587
+ RSK+SL NK+T+YK + P Y
Sbjct: 780 LSSRSKLSLSNKLTIYKQILAPNWKY 805
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 42.3 bits (95), Expect = 5e-04
Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Frame = +2
Query: 5 LSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPPTH--------LAL 160
L +R F RV + S PR + AGVPQG D+P H LA
Sbjct: 618 LEDRRFMVRVRNSYSIPRVMRAGVPQGSVLGPLLYSVFTADLPCPNAYHMADPRKALLAT 677
Query: 161 FADDTTVYYSSRNKSLIAKKLQSAALALGQW 253
+ADD + YSS + A+ LQ L W
Sbjct: 678 YADDIALLYSSNCCNEAARGLQEYLTTLAAW 708
Score = 36.7 bits (81), Expect = 0.027
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 355 LTPPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDR 477
+T PI L + + KYLG+TLD +TF PH+K+ R
Sbjct: 734 VTAPIELEGVILDQPSQAKYLGITLDKRLTFGPHLKATTRR 774
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Frame = +2
Query: 5 LSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDI----PRSPPTHLALFADD 172
++NRSFR R+ S+ L G+PQG DI R +++L+ADD
Sbjct: 618 MTNRSFRVRINNVTSNSHILHNGIPQGSPLSVVLFMIAIEDINDIVTRHKDIYISLYADD 677
Query: 173 TTVYYSSRNKSLIAKKLQSAALALGQW 253
++ +N + + +K + W
Sbjct: 678 AIIFTKIKNINTVREKFLEILQEINSW 704
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 39.1 bits (87), Expect = 0.005
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 361 PPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAFILGRL 501
P + + +P+ R +YLG+T+ M F HI S+R R ++G L
Sbjct: 719 PTVRFAGRNLPYVRSCRYLGITVSEGMKFLTHIASLRQRMTGVVGAL 765
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 38.7 bits (86), Expect = 0.007
Identities = 23/83 (27%), Positives = 35/83 (42%)
Frame = +2
Query: 5 LSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPPTHLALFADDTTVY 184
L +R F R S+ + AGVPQG DIP + ++ FADDT +
Sbjct: 615 LYDRKFAVRCNTATSTVHTIEAGVPQGSVLGPTLYLIYTADIPTNSRLTVSTFADDTAIL 674
Query: 185 YSSRNKSLIAKKLQSAALALGQW 253
SR+ +L + + +W
Sbjct: 675 SRSRSPIQATAQLALYLIDIKKW 697
Score = 37.5 bits (83), Expect = 0.015
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +1
Query: 361 PPITLFRQPIPWARKVKYLGVTLDASMTFRPHIKS 465
PP+ L P+P A +V YLGV LD +T+R HI++
Sbjct: 723 PPLLLNSIPLPKADEVTYLGVHLDRRLTWRRHIEA 757
Score = 28.3 bits (60), Expect = 9.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 522 SKMSLRNKVTLYKTCIRPVMTYAS 593
S +SL +KV LY + ++P+ TY S
Sbjct: 777 SPLSLDHKVLLYNSILKPIWTYGS 800
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 36.7 bits (81), Expect = 0.027
Identities = 22/64 (34%), Positives = 27/64 (42%)
Frame = +2
Query: 5 LSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPPTHLALFADDTTVY 184
L R F R + SS + AGVPQG DIP + + FADDT +
Sbjct: 154 LDKRVFAVRCSSSTSSDFTIEAGVPQGSVLGPILYTLYTADIPTNYQLTIFTFADDTAII 213
Query: 185 YSSR 196
SR
Sbjct: 214 SRSR 217
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 36.3 bits (80), Expect = 0.035
Identities = 25/68 (36%), Positives = 31/68 (45%)
Frame = +1
Query: 262 WRIDINPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASM 441
WRI IN K V F PP+ L IP A +V YLGV LD +
Sbjct: 699 WRISINVQKCKQVTFTLNK-----------QTCPPLVLNNICIPQADEVTYLGVHLDRRL 747
Query: 442 TFRPHIKS 465
T+R HI++
Sbjct: 748 TWRKHIEA 755
Score = 33.9 bits (74), Expect = 0.19
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Frame = +2
Query: 5 LSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPPTHLALFADDTTVY 184
L NR F R + + S + AGVPQG D P + FADDT +
Sbjct: 613 LYNRVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYTLYTADFPIDYNLTTSTFADDTAIL 672
Query: 185 YSS----RNKSLIAKKLQSAALALGQW 253
S + +L+++ L S L W
Sbjct: 673 SRSKCPIKATALLSRHLTSVERWLADW 699
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 36.3 bits (80), Expect = 0.035
Identities = 25/68 (36%), Positives = 31/68 (45%)
Frame = +1
Query: 262 WRIDINPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDASM 441
WRI IN K V F PP+ L IP A +V YLGV LD +
Sbjct: 699 WRISINVQKCKQVTFTLNK-----------QTCPPLVLNNICIPQADEVTYLGVHLDRRL 747
Query: 442 TFRPHIKS 465
T+R HI++
Sbjct: 748 TWRKHIEA 755
Score = 31.5 bits (68), Expect = 1.0
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Frame = +2
Query: 5 LSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPPTHLALFADDTTVY 184
L N F R + + S + AGVPQG D P + FADDT +
Sbjct: 613 LYNTVFAIRCDTSTSRDCAIEAGVPQGSVLGPILYTLYTADFPIDYNLTTSTFADDTAIL 672
Query: 185 YSS----RNKSLIAKKLQSAALALGQW 253
S + +L+++ L S L W
Sbjct: 673 SRSKCPIKATALLSRHLTSVERWLADW 699
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 31.1 bits (67), Expect = 1.3
Identities = 22/70 (31%), Positives = 31/70 (44%)
Frame = +1
Query: 259 KWRIDINPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDAS 438
KW I +N AK+ V++ NL + + Q I K YLGV LD+
Sbjct: 640 KWGISVNAAKTGHVIYTLKNDIPT-------NLKT-MKIKGQAIKKESKQSYLGVILDSK 691
Query: 439 MTFRPHIKSV 468
+T PH+ V
Sbjct: 692 LTLSPHVTKV 701
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 31.1 bits (67), Expect = 1.3
Identities = 22/70 (31%), Positives = 31/70 (44%)
Frame = +1
Query: 259 KWRIDINPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDAS 438
KW I +N AK+ V++ NL + + Q I K YLGV LD+
Sbjct: 756 KWGISVNAAKTGHVIYTLKNDIPT-------NLKT-MKIKGQAIKKESKQSYLGVILDSK 807
Query: 439 MTFRPHIKSV 468
+T PH+ V
Sbjct: 808 LTLSPHVTKV 817
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 31.1 bits (67), Expect = 1.3
Identities = 22/70 (31%), Positives = 31/70 (44%)
Frame = +1
Query: 259 KWRIDINPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDAS 438
KW I +N AK+ V++ NL + + Q I K YLGV LD+
Sbjct: 756 KWGISVNAAKTGHVIYTLKNDIPT-------NLKT-MKIKGQAIKKESKQSYLGVILDSK 807
Query: 439 MTFRPHIKSV 468
+T PH+ V
Sbjct: 808 LTLSPHVTKV 817
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 31.1 bits (67), Expect = 1.3
Identities = 22/70 (31%), Positives = 31/70 (44%)
Frame = +1
Query: 259 KWRIDINPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDAS 438
KW I +N AK+ V++ NL + + Q I K YLGV LD+
Sbjct: 718 KWGISVNAAKTGHVIYTLKNDIPT-------NLKT-MKIKGQAIKKESKQSYLGVILDSK 769
Query: 439 MTFRPHIKSV 468
+T PH+ V
Sbjct: 770 LTLSPHVTKV 779
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 31.1 bits (67), Expect = 1.3
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 17/102 (16%)
Frame = +2
Query: 5 LSNRSFRYRVEG-TRSSPRPLTAGVPQGXXXXXXXXXXXXNDIP-----------RSPPT 148
LSNR+F R++G T S + AGVPQG +D+P P
Sbjct: 218 LSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPIVKDYMRNISFPDY 277
Query: 149 H-----LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWSE 259
H LA +ADDT + S+ L Q+ +WS+
Sbjct: 278 HPTNIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSK 319
Score = 29.1 bits (62), Expect = 5.4
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = +1
Query: 256 RKWRIDINPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDA 435
+KW I IN K+ +LF TPP+ + Q K +YLG+ LD
Sbjct: 319 KKWDIAINAKKTGHILFSLKKEQTNIY-------TPPL-INGQRAAKLNKQRYLGLMLDR 370
Query: 436 SMTFRPHIKSVRDR 477
+TF H+ ++ +
Sbjct: 371 RLTFCAHMTLLKGK 384
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 31.1 bits (67), Expect = 1.3
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 17/102 (16%)
Frame = +2
Query: 5 LSNRSFRYRVEG-TRSSPRPLTAGVPQGXXXXXXXXXXXXNDIP-----------RSPPT 148
LSNR+F R++G T S + AGVPQG +D+P P
Sbjct: 665 LSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPIVKDYMRNISFPDY 724
Query: 149 H-----LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWSE 259
H LA +ADDT + S+ L Q+ +WS+
Sbjct: 725 HPTNIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSK 766
Score = 29.1 bits (62), Expect = 5.4
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = +1
Query: 256 RKWRIDINPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDA 435
+KW I IN K+ +LF TPP+ + Q K +YLG+ LD
Sbjct: 766 KKWDIAINAKKTGHILFSLKKEQTNIY-------TPPL-INGQRAAKLNKQRYLGLMLDR 817
Query: 436 SMTFRPHIKSVRDR 477
+TF H+ ++ +
Sbjct: 818 RLTFCAHMTLLKGK 831
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 31.1 bits (67), Expect = 1.3
Identities = 22/70 (31%), Positives = 31/70 (44%)
Frame = +1
Query: 259 KWRIDINPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDAS 438
KW I +N AK+ V++ NL + + Q I K YLGV LD+
Sbjct: 756 KWGISVNAAKTGHVIYTLKNDIPT-------NLKT-MKIKGQAIKKESKQSYLGVILDSK 807
Query: 439 MTFRPHIKSV 468
+T PH+ V
Sbjct: 808 LTLSPHVTKV 817
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 31.1 bits (67), Expect = 1.3
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 17/102 (16%)
Frame = +2
Query: 5 LSNRSFRYRVEG-TRSSPRPLTAGVPQGXXXXXXXXXXXXNDIP-----------RSPPT 148
LSNR+F R++G T S + AGVPQG +D+P P
Sbjct: 665 LSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPIVKDYMRNISFPDY 724
Query: 149 H-----LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWSE 259
H LA +ADDT + S+ L Q+ +WS+
Sbjct: 725 HPTNIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSK 766
Score = 29.1 bits (62), Expect = 5.4
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = +1
Query: 256 RKWRIDINPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDA 435
+KW I IN K+ +LF TPP+ + Q K +YLG+ LD
Sbjct: 766 KKWDIAINAKKTGHILFSLKKEQTNIY-------TPPL-INGQRAAKLNKQRYLGLMLDR 817
Query: 436 SMTFRPHIKSVRDR 477
+TF H+ ++ +
Sbjct: 818 RLTFCAHMTLLKGK 831
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 31.1 bits (67), Expect = 1.3
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 17/102 (16%)
Frame = +2
Query: 5 LSNRSFRYRVEG-TRSSPRPLTAGVPQGXXXXXXXXXXXXNDIP-----------RSPPT 148
LSNR+F R++G T S + AGVPQG +D+P P
Sbjct: 665 LSNRTFSVRIDGETTSRIGNIRAGVPQGSILGPVLYSIYSSDMPYPIVKDYMRNISFPDY 724
Query: 149 H-----LALFADDTTVYYSSRNKSLIAKKLQSAALALGQWSE 259
H LA +ADDT + S+ L Q+ +WS+
Sbjct: 725 HPTNIILATYADDTIILSRSKYTKLAINLNQNYLNVFCRWSK 766
Score = 29.1 bits (62), Expect = 5.4
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = +1
Query: 256 RKWRIDINPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDA 435
+KW I IN K+ +LF TPP+ + Q K +YLG+ LD
Sbjct: 766 KKWDIAINAKKTGHILFSLKKEQTNIY-------TPPL-INGQRAAKLNKQRYLGLMLDR 817
Query: 436 SMTFRPHIKSVRDR 477
+TF H+ ++ +
Sbjct: 818 RLTFCAHMTLLKGK 831
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +1
Query: 397 ARKVKYLGVTLDASMTFRPHIKSVRDRAAF---ILGRLYPRSVSGVKCP 534
A +KYLGV +D ++F+ H + +AA L R+ P +V G + P
Sbjct: 714 AETLKYLGVLIDRRLSFKAHARYASKKAAMTAAALARIMP-NVGGPRLP 761
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 29.9 bits (64), Expect = 3.1
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 5 LSNRSFRYRVEGTRSSPRPLTAGVPQG 85
+SNR RV SSP PL G+PQG
Sbjct: 610 MSNRKITVRVGPHTSSPLPLFNGIPQG 636
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 29.9 bits (64), Expect = 3.1
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = +1
Query: 259 KWRIDINPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFRQPIPWARKVKYLGVTLDAS 438
KW I +N AK+ V+F + + Q I K YLGVTLD+
Sbjct: 768 KWGISVNAAKTGHVIFTLKNDLPTNSMN--------VKIKGQTIKKESKQSYLGVTLDSK 819
Query: 439 MTFRPHI 459
+T H+
Sbjct: 820 LTLSSHV 826
>Z29571-1|CAA82675.1| 122|Drosophila melanogaster unknown protein.
Length = 122
Score = 28.7 bits (61), Expect = 7.1
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 611 PREQHHTRVSHDGPYASFVKCHLVPKGHFTPL 516
PR H R+S P+A CHLV F PL
Sbjct: 63 PRWPRH-RISPTAPFAKETPCHLVAVSFFKPL 93
>AE014134-181|AAF51435.1| 122|Drosophila melanogaster CG11297-PA
protein.
Length = 122
Score = 28.7 bits (61), Expect = 7.1
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 611 PREQHHTRVSHDGPYASFVKCHLVPKGHFTPL 516
PR H R+S P+A CHLV F PL
Sbjct: 63 PRWPRH-RISPTAPFAKETPCHLVAVSFFKPL 93
>BT023790-1|AAZ41799.1| 828|Drosophila melanogaster GH11852p
protein.
Length = 828
Score = 28.3 bits (60), Expect = 9.4
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -3
Query: 494 PRINAARSRTDFICGRNVIDASRVTPRYLTFLAQGMG 384
P I A+RSR + VTP+YL LA G G
Sbjct: 165 PTIAASRSRRSIKPNPKYVSEDIVTPKYLAALADGGG 201
>AE014298-1596|AAF48032.1| 943|Drosophila melanogaster CG1737-PA
protein.
Length = 943
Score = 28.3 bits (60), Expect = 9.4
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -3
Query: 494 PRINAARSRTDFICGRNVIDASRVTPRYLTFLAQGMG 384
P I A+RSR + VTP+YL LA G G
Sbjct: 165 PTIAASRSRRSIKPNPKYVSEDIVTPKYLAALADGGG 201
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,533,892
Number of Sequences: 53049
Number of extensions: 705482
Number of successful extensions: 1974
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1964
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2703623850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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