Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0954
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    56   2e-08
AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical ...    36   0.025
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    31   0.93 
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z83227-4|CAB05729.2|  336|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U63996-1|AAC47234.1|  336|Caenorhabditis elegans zinc finger pro...    28   6.5  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 39/99 (39%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
 Frame = +2

Query: 5   LSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPPTHLAL--FADDTT 178
           LSNRSFR R+  T SS +  T GVPQG            NDI    P  +A   FADDT 
Sbjct: 54  LSNRSFRVRIGQTLSSRKFATCGVPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDTK 113

Query: 179 VYYSSRNKSLIAKKLQSAALALGQWSENGA*TSTQRKVL 295
           + Y+S  K+     LQSA  A+  W++    T  Q K +
Sbjct: 114 L-YASTPKTESENNLQSALDAVVDWTKGSKLTLNQSKTV 151


>AC090999-1|AAK26146.1|  390|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.8 protein.
          Length = 390

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = -2

Query: 129 ISLTNKLNRRGERTEPCGTPAVRGRGEER 43
           ISLTN     GERT+PCGTP     G E+
Sbjct: 50  ISLTNMPKSTGERTDPCGTPHTAFLGSEK 78


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 1/114 (0%)
 Frame = +2

Query: 5   LSNRSFRYRVEGTRSSPRPLTAGVPQGXXXXXXXXXXXXNDIPRSPPTHLALFADDTTVY 184
           L  R  R   +   S    L  GVPQG             D+P    T L  +ADD ++ 
Sbjct: 510 LHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTFYLKDMPTQQDTMLISYADDMSII 569

Query: 185 YSSRNKSLIAKKLQSAALALGQW-SENGA*TSTQRKVLRCYFRGEAPHGFPPGL 343
              +     A+K+Q     + ++  E G   S ++  +  +      H   P +
Sbjct: 570 ARDKKIEKAAEKVQLHIDEIAKYLKERGMSISAEKSTVTVFSCDPKEHKTKPDI 623


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 385 PIPWARKVKYLGVTLDASMTFRPHIKSV 468
           PI  +   + LG+  D+ +TF+PHIK +
Sbjct: 188 PISPSNIARDLGILTDSKLTFKPHIKKI 215


>Z83227-4|CAB05729.2|  336|Caenorhabditis elegans Hypothetical
           protein F45B8.4 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 608 REQHHTRVSHDGPYASFVKCHLVPKGHFTPLTDLG 504
           RE HH     +   AS +   L PKG+ TP T  G
Sbjct: 257 RESHHPGHPEECVSASQISSDLSPKGYMTPPTSNG 291


>U63996-1|AAC47234.1|  336|Caenorhabditis elegans zinc finger
           protein PAG-3 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 608 REQHHTRVSHDGPYASFVKCHLVPKGHFTPLTDLG 504
           RE HH     +   AS +   L PKG+ TP T  G
Sbjct: 257 RESHHPGHPEECVSASQISSDLSPKGYMTPPTSNG 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,440,549
Number of Sequences: 27780
Number of extensions: 332518
Number of successful extensions: 797
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)