Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0954
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54330.1 68414.m06194 no apical meristem (NAM) family protein...    29   2.6  
At1g74790.1 68414.m08665 expressed protein contains similarity t...    28   6.1  
At1g70230.1 68414.m08081 expressed protein                             27   8.0  

>At1g54330.1 68414.m06194 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAM protein GI:1279639 from [Petunia hybrida]
          Length = 298

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
 Frame = +2

Query: 182 YYSSRNKSLIAKKLQSAALALGQWSENGA*TSTQRKVLRC-------YFRGEAPHG 328
           +YS+R+K        + A   G W   G   + + K ++        Y+RG APHG
Sbjct: 63  FYSTRDKKYPNGSRTNRATRAGYWKATGKDRTVESKKMKMGMKKTLVYYRGRAPHG 118


>At1g74790.1 68414.m08665 expressed protein contains similarity to
           hedgehog-interacting protein GI:4868122 from [Mus
           musculus]
          Length = 695

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = -2

Query: 516 YRSGVESTENKRGSVTD*FYMRAECHRCIQGNAQVLDLPGPGY--GLSKESNRG 361
           Y      +  K  S+T  ++ R+E   CI G     DL G G   G+   +N G
Sbjct: 526 YNHSEVDSSGKSASITGGYFYRSETDPCIAGRYVYADLYGNGVWAGIETPANSG 579


>At1g70230.1 68414.m08081 expressed protein
          Length = 416

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 567 CKFCKVSPCSEGTFYSAYRSGVEST 493
           C  C+ S C+E  FY  +R  + +T
Sbjct: 262 CHSCETSNCTEVGFYDVFRKAIRTT 286


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,834,697
Number of Sequences: 28952
Number of extensions: 318941
Number of successful extensions: 727
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)