Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0953
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.062
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    27   1.8  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   5.4  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   7.2  
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.2  
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...    25   9.5  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   9.5  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 32.3 bits (70), Expect = 0.062
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +2

Query: 104  PTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLER 223
            P PV+N   SP  +PPK +  P   +S P  T  A PL R
Sbjct: 972  PLPVSNILSSPTSEPPKDH-PPSAPLSKPVSTSPAAPLAR 1010


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +2

Query: 101 LPT---PVANSPLSPVRQPPKSNIKPPTRISLPT 193
           LPT   P  N+P  PV   P  +I+PP  ++LPT
Sbjct: 334 LPTSNLPSQNAPARPVE--PSPSIQPPNLLNLPT 365


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 98  SLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSA 208
           S+P   A S  SPV++PP      P R++  T + S+
Sbjct: 206 SVPAATAASTASPVKKPPPPAPPKPRRLAARTSSNSS 242


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 68  PXTGGXGRVKSLPTPVANSPLSPVRQPP-KSNIKPPTRISLPTRTFSANP 214
           P T    R    P   A++P  P + PP  S++ PP + + P ++  + P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP 188



 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 104 PTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPL 217
           PTP +     P   PP+ +I PP+  S P     A P+
Sbjct: 131 PTPQSELR-PPTSAPPRPSIPPPSPASAPPIPSKAPPI 167


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = +2

Query: 56  IFXAPXTGGXGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANP 214
           IF AP      R  S P  +  +P+S    PP +   P  R  LP R+ S  P
Sbjct: 21  IFGAPRKREPARTVSTPAFMEPAPVSKKPLPPPTRRLP--RKPLPFRSTSLQP 71


>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 125 PLSPVRQPPKSNIKPPTRISLPTRTFSANPL 217
           P SP +   +S   PPT IS+P    S+NPL
Sbjct: 67  PFSPSKIMNRSISVPPTNISVP--QISSNPL 95


>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 323 RTATNWXSXQERDLRM 370
           RT+ NW + QERD+++
Sbjct: 350 RTSKNWGTRQERDVKL 365


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 98   SLPTPVANSPLSPVRQPPKSNIKPPTRISLP 190
            S+P+P A SP    + PP S+  PP   + P
Sbjct: 1039 SVPSPSALSPSVTPQLPPVSSRLPPVSATRP 1069


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,198
Number of Sequences: 5004
Number of extensions: 29383
Number of successful extensions: 94
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)