Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0953
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0235 + 32539025-32539886,32540330-32540473,32540595-325407...    31   0.60 
06_03_0905 + 25843547-25844314                                         29   2.4  
11_01_0066 - 536281-537196,537397-537452                               29   3.2  
08_02_1227 - 25398063-25398302,25398629-25398790,25399019-253991...    29   3.2  
11_06_0610 - 25449085-25453284                                         29   4.2  
09_04_0430 + 17502387-17503505                                         28   7.4  
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008...    28   7.4  
08_02_1084 - 24232968-24234779                                         27   9.8  

>03_06_0235 +
           32539025-32539886,32540330-32540473,32540595-32540747,
           32540871-32540986,32541254-32541421,32541534-32541758,
           32541884-32542015
          Length = 599

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 65  APXTGGXGRVKSLPTPVANSPLSPVRQPPK 154
           AP  GG GR+ + P P +++PL+   +PP+
Sbjct: 40  APDGGGQGRLPAPPPPTSDAPLAVQNKPPE 69


>06_03_0905 + 25843547-25844314
          Length = 255

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 104 PTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPL 217
           P P+   P  PV  PPK  +  P  ++ PT   +  P+
Sbjct: 76  PPPLVAPPKVPVTHPPKGPVTRPPPVTYPTPPVTTPPV 113


>11_01_0066 - 536281-537196,537397-537452
          Length = 323

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +2

Query: 104 PTPVANSPLSPVRQPPKSNIKPPTRISLPTRT 199
           P  +A  P SP   PP S   PP     PT T
Sbjct: 217 PPSIATPPPSPASPPPPSTATPPPPSPTPTTT 248


>08_02_1227 -
           25398063-25398302,25398629-25398790,25399019-25399150,
           25399909-25399961,25400465-25400942
          Length = 354

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 116 ANSPLSPVRQPPKSNIKPPTRISLP 190
           A SPL P   PP SN +PP   S+P
Sbjct: 328 AGSPLHPGIAPPSSNSQPPFLSSMP 352


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +2

Query: 65   APXTGGXGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANP 214
            AP       VKSLP P   +P+S +  PP  ++ PP  +SLP     + P
Sbjct: 1252 APVILSPPAVKSLPPP---APVS-LPPPPVKSLPPPAPVSLPPPVVKSLP 1297


>09_04_0430 + 17502387-17503505
          Length = 372

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 89  RVKSLPTPVANSPLS-PVRQPPKSNIKPPTRIS-LPTRTFSANPLE 220
           R   LPTP    P S P R  P+S   PP R++  P  T +A P+E
Sbjct: 178 RAAPLPTPPRAPPQSTPPRAAPQST--PPQRVAPQPPATAAAPPIE 221


>07_03_1486 +
           26899479-26899549,26899861-26899989,26900649-26900834,
           26901025-26901247,26901662-26901666,26901796-26901924,
           26902697-26902894,26903138-26903356,26903461-26903699,
           26903797-26903888,26904009-26904224,26904327-26904554,
           26904631-26904722,26904806-26904899,26905475-26905567,
           26905667-26906640,26906727-26906841,26907135-26908895
          Length = 1687

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 107 TPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPL 217
           T   N   S VR+P  S+I+ P R  + +R+ S +PL
Sbjct: 12  TQTTNFVWSVVRRPAASSIRSPVRPVISSRSRSTSPL 48


>08_02_1084 - 24232968-24234779
          Length = 603

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 95  KSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANP 214
           + LP P    PL P +QPP   + PP +   P    S  P
Sbjct: 57  QQLPPPSLPPPL-PQKQPPSQQLPPPPQQQQPPPQHSLPP 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,598,071
Number of Sequences: 37544
Number of extensions: 216306
Number of successful extensions: 701
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)