Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0953
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_738| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.5  
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     29   3.3  
SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)                  29   3.3  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              29   3.3  
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)                 28   5.7  
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +2

Query: 92  VKSLPT-PVANSPLSPVRQPPKSNI-KPPTR--ISLPTRTFSANP 214
           + S PT P+ + P SP+  PP + I  PPT   +S PT +  + P
Sbjct: 16  IMSPPTNPIMSPPTSPIMSPPTNPIMSPPTNPIMSPPTNSIMSAP 60


>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2346

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
 Frame = +2

Query: 101  LPTPVANSPLSPVRQPPKSN--------IKPPTRISLPTR 196
            LP P+   PL P+R PP  +        + PP+RI LP++
Sbjct: 1340 LPLPLPRLPLPPLRLPPPHSRLPLPPPKLPPPSRIPLPSK 1379



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 101  LPTPVANSPLSPVRQPPKSNIKPPTRIS 184
            LP P +  PL P + PP S I  P+++S
Sbjct: 1354 LPPPHSRLPLPPPKLPPPSRIPLPSKLS 1381


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = +2

Query: 65  APXTGGXGRVKSLPTPVANSPLSPVRQPPKSNIKPPTR-ISLPTRTFSANP 214
           AP   G  R    P P  N P  P+R P      PP +    P +  S+NP
Sbjct: 230 APPPTGSSRPLPAPPPGENRPPPPMRGPTSGGEPPPPKNAPPPPKRGSSNP 280


>SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)
          Length = 818

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +2

Query: 89  RVKSLPTPVANSPLSPVRQP----PKSNIKPPTRISLPTR 196
           R  SLP   A+SP +P   P    P SN  PP+ +SL  R
Sbjct: 678 RSLSLPCTAASSPSTPASSPSPTPPLSNSLPPSTLSLMLR 717


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = +2

Query: 65  APXTGGXGRVKSLPTPVANSPLSPVRQPPKSNIKPPTR-ISLPTRTFSANP 214
           AP   G  R    P P  N P  P+R P      PP +    P +  S+NP
Sbjct: 142 APPPTGSSRPLPAPPPGENRPPPPMRGPTSGGEPPPPKNAPPPPKRGSSNP 192


>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1212

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +2

Query: 104  PTPVANSPLSPVRQPP---KSNIKPPTRISLPTRTFSANPLE 220
            P+P  + P  P RQPP    S   PP R   P  T  A+P E
Sbjct: 1062 PSPPPSEPAPPPRQPPPPSTSQPVPPPRQPDPIPTNPAHPTE 1103


>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
          Length = 519

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +2

Query: 104 PTPVANSPLSPVRQPPKSNIKPPTRI-SLPTRTFSANP 214
           P P    PL P+R+PP     PP  + S PT   +  P
Sbjct: 36  PIPHGPRPLPPLREPPTPAPTPPPALPSTPTLPLAPRP 73


>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2142

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 98   SLPTPVANSPLSPVRQPPKS 157
            SLP P+A+  L P  QPPK+
Sbjct: 1496 SLPQPIASKQLEPPPQPPKA 1515


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 119  NSPLSPVRQPPKSNIKPPTRISLPTRTFSA 208
            ++PLSP   PPKS ++ P +     +  SA
Sbjct: 2161 SNPLSPFHDPPKSPVEEPMQFEQLAKVLSA 2190


>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 795

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 101 LPTPVANSPLSPVRQPPKSNIKPPTRISLP 190
           LPTP+A+S   P+  PP     PPT I +P
Sbjct: 689 LPTPIASSEPLPLPPPP-----PPTGIDIP 713


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,404,200
Number of Sequences: 59808
Number of extensions: 231312
Number of successful extensions: 628
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)