Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0953
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13642-4|AAG00043.2|  687|Caenorhabditis elegans Hypothetical pr...    33   0.23 
AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical...    28   5.0  
AF099913-6|AAC68748.2|  203|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U13642-4|AAG00043.2|  687|Caenorhabditis elegans Hypothetical
           protein ZC395.8 protein.
          Length = 687

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +2

Query: 68  PXTGGXGRVKSLPTPVANSPLSPVRQPPKSN---IKPPTRISLPTRTFSA-NPLERXF 229
           P       + S+P P   SP  P+  PP ++   + PP    LPTR  SA N LE  +
Sbjct: 526 PKEENNSTLPSIPIPSIFSPYEPIVPPPATSPDPMNPPIASLLPTRILSATNVLENKY 583


>AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.14 protein.
          Length = 555

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +2

Query: 89  RVKSLPTPVANSPL-SPVR--QPPKSNIKPPT 175
           R K  P  V  +PL +P+R  QPP  NIKP T
Sbjct: 386 RKKEKPKVVRKAPLRAPIRPRQPPNQNIKPIT 417


>AF099913-6|AAC68748.2|  203|Caenorhabditis elegans Hypothetical
           protein C29F9.6 protein.
          Length = 203

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 331 RCTRANXPICYXTRAAQNIH 272
           RCT A  PIC   R AQN++
Sbjct: 54  RCTNAECPICGAHRTAQNMN 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,339,275
Number of Sequences: 27780
Number of extensions: 177340
Number of successful extensions: 497
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)