Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0953
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    26   0.27 
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         24   1.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.4  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 253 TVXYRKDGYFVPPEFXNKLXSLPAYSDKL 339
           T+ YR D   V P+F N L  L     KL
Sbjct: 256 TIKYRNDNNIVRPDFINMLMELQKNPQKL 284


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 98  SLPTPVANSPLSPVRQPPKSNIKPPTRI 181
           S+P  V + P+  +RQ  + NI+P T +
Sbjct: 20  SVPKVVYDGPIYELRQIEEENIEPDTEL 47


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 107 TPVANSPLSPVRQPPKSNIKPPTRISL 187
           TP +++P+SPV  P   ++  P R +L
Sbjct: 436 TPPSSNPVSPVPSPDPLDLAIPVRETL 462


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 89  RVKSLPTPVANSPLSPVRQPPKSNIKPPTRIS 184
           +V    +P+   P++PV++      +PP R+S
Sbjct: 11  KVDRSTSPLPRKPVNPVQELKALFAEPPVRVS 42


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +2

Query: 137 VRQPPKSNIK---PPTRISLPTRTFSANPLE 220
           +R+P K+ ++       ++LPT T+S +P E
Sbjct: 348 MRRPKKTRLRWMMEIPNVTLPTSTYSGSPTE 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,500
Number of Sequences: 438
Number of extensions: 2167
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)