Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0953
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 31 0.50
At5g01840.1 68418.m00103 ovate family protein 59% similar to ova... 29 2.7
At2g24570.1 68415.m02934 WRKY family transcription factor identi... 29 2.7
At2g44630.1 68415.m05555 kelch repeat-containing F-box family pr... 29 3.5
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 29 3.5
At4g35240.1 68417.m05009 expressed protein contains Pfam domains... 28 4.7
At4g30680.1 68417.m04349 MA3 domain-containing protein similar t... 28 4.7
At5g56890.1 68418.m07099 protein kinase family protein contains ... 28 6.2
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa... 28 6.2
At4g39745.1 68417.m05627 hydroxyproline-rich glycoprotein family... 27 8.2
At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identic... 27 8.2
At3g20850.1 68416.m02636 proline-rich family protein contains pr... 27 8.2
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 27 8.2
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 27 8.2
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 31.5 bits (68), Expect = 0.50
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Frame = +2
Query: 53 NIFXAPXTGGXGRVKSLPTPV------ANSPLSPVRQPPKSNIKPPTRISLPTRTFSANP 214
N+ A + SLPTP A P SP +PP + KPPT + P + + P
Sbjct: 17 NVVFAASNEESNALVSLPTPTLPSPSPATKPPSPALKPPTPSYKPPTLPTTPIKPPTTKP 76
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 110 PVANSPLSPVRQPPKSNIKPPTRISLPTR 196
P N P +PV+ P +KPPT + TR
Sbjct: 185 PTYNPPTTPVKPPTAPPVKPPTPPPVRTR 213
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = +2
Query: 92 VKSLPTPVANSP--LSPVRQPPKSNIKPPTR---ISLPTRTFSANP 214
VK TP SP P +PP S +KPPT + PT T P
Sbjct: 139 VKPPTTPPVQSPPVQPPTYKPPTSPVKPPTTTPPVKPPTTTPPVQP 184
>At5g01840.1 68418.m00103 ovate family protein 59% similar to ovate
protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 270
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 98 SLPTPVANSPLS--PVRQPPKSNIKPPTRISLPTRTFSANPL 217
++PTP + +PLS P R+P S+ PP S P R S N L
Sbjct: 47 AVPTPTSTTPLSPRPPRRPSHSSKAPP---SHPPRKSSGNRL 85
>At2g24570.1 68415.m02934 WRKY family transcription factor identical
to WRKY transcription factor 17 GI:15991743 from
[Arabidopsis thaliana]
Length = 321
Score = 29.1 bits (62), Expect = 2.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 134 PVRQPPKSNIKPPTRISLPTRTFSANP 214
PV PP S++ PP +++ P T + P
Sbjct: 76 PVHSPPSSSVPPPVKVTTPAPTQISAP 102
>At2g44630.1 68415.m05555 kelch repeat-containing F-box family
protein similar to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF00646: F-box domain, PF01344: Kelch motif
Length = 372
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 116 ANSPLSPVRQPPKSNIKPPTRISLP 190
A+ P QPP S++ PP+ SLP
Sbjct: 4 ADEPPQKTNQPPSSSLTPPSLFSLP 28
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +2
Query: 98 SLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANP 214
S P P SP PV PP + PP P FS P
Sbjct: 566 SPPPPHVYSPPPPVASPPPPSPPPPVHSPPPPPVFSPPP 604
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 92 VKSLPTPVANSPL-SPVRQPPK-SNIKPPTRISLPTRTFSANP 214
V S P PV + P SPV PP S+ PP S P TFS P
Sbjct: 599 VFSPPPPVFSPPPPSPVYSPPPPSHSPPPPVYSPPPPTFSPPP 641
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/41 (43%), Positives = 19/41 (46%)
Frame = +2
Query: 92 VKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANP 214
V S P PVA SP P PP + PP S P FS P
Sbjct: 572 VYSPPPPVA-SPPPPSPPPPVHSPPPPPVFSPPPPVFSPPP 611
>At4g35240.1 68417.m05009 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 828
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = +2
Query: 17 PTVTMNRFFREXNIFXAPXTGGXGRVKSLPTPVANSPLSPVRQPPKSN 160
P N +F N P G G + T A P P PP+SN
Sbjct: 229 PYPPQNSYFGYSNPVPGPGPGYYGSSSASTTAAATKPPPPPPSPPRSN 276
>At4g30680.1 68417.m04349 MA3 domain-containing protein similar to
SP|Q03387 Eukaryotic initiation factor (iso)4F subunit
P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum};
contains Pfam profile PF02847: MA3 domain
Length = 263
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 80 GXGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPT 193
G + K +P+P + P QP + PPT SL T
Sbjct: 64 GSQQPKPVPSPTRQTVEKPKPQPQPQEVAPPTTTSLNT 101
>At5g56890.1 68418.m07099 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 1113
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +2
Query: 86 GRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSAN 211
GRV P PV+ SP+S + P + PPT ++P R S N
Sbjct: 147 GRVT--PAPVS-SPVSDIPPIPSVALPPPTPSNVPPRNASNN 185
>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245; contains Pfam profile
PF01190: Pollen proteins Ole e I family
Length = 359
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 92 VKSLPTPVANSPLSPVRQPP-KSNIKPPTR 178
VK+ +P A P+ P PP K+ +KPPT+
Sbjct: 76 VKAPVSPPAKPPVKPPVYPPTKAPVKPPTK 105
>At4g39745.1 68417.m05627 hydroxyproline-rich glycoprotein family
protein
Length = 253
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -1
Query: 135 GDSGELATGVGXDLTRPXPPVFGASKMLXSRKKRFIVT 22
G S + + ++ +P PPVF K+ SR ++T
Sbjct: 102 GSSKDAGIAIRGEIIKPEPPVFNVKKLEKSRHFEIMLT 139
>At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identical
to gi|10880497|gb|AAG24278; supported by Ceres cDNA
265772
Length = 127
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 104 PTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANP 214
P P SPL QPP++ P+ PT T SA P
Sbjct: 26 PAPT-RSPLPSPAQPPRTAAPTPSITPTPTPTPSATP 61
>At3g20850.1 68416.m02636 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 134
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/56 (25%), Positives = 23/56 (41%)
Frame = +2
Query: 26 TMNRFFREXNIFXAPXTGGXGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPT 193
T N + + + +P + PTPV + P + + PP PP + PT
Sbjct: 32 TYNNYQPQHSPLPSPVYSSPADLPPPPTPVYSPPPADLPPPPTPYYSPPADLPPPT 87
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +2
Query: 92 VKSLPTPVANSPLSPVRQPPKSNIKPPTRISLP 190
V S P P +SP PV PP PP + P
Sbjct: 681 VHSPPPPPVHSPPPPVHSPPPPVHSPPPPVHSP 713
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +2
Query: 92 VKSLPTPVANSPLSPVRQPPKSNIKPPTRISLP 190
V S P P +SP PV PP PP + P
Sbjct: 763 VHSPPPPPVHSPPPPVHSPPPPVHSPPPPVHSP 795
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +2
Query: 92 VKSLPTPVANSPLSPVRQPPKSNIKPPTRI-SLPTRTFSANP 214
V S P PV + P PV PP PP + S P +S P
Sbjct: 577 VHSPPPPVYSPPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPP 618
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,525,785
Number of Sequences: 28952
Number of extensions: 162608
Number of successful extensions: 714
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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