Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0952
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    29   0.76 
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.3  
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||...    27   3.1  
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    26   5.3  

>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -3

Query: 96  TGWNSLGRSTSLGFSTAVAVLSCGYRSCPIV 4
           +GW ++G S  L F+T V VLS G+ SC  +
Sbjct: 240 SGWTNMGWSFILCFTTPVWVLS-GFESCATI 269


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 380 GLTGVSKSSTAAMLPSFFSRSSTSQP-PSLVKPIASI*RSASSYVA 246
           G+ GVSK  +++    FFS   +SQP    V   +S  R   SY+A
Sbjct: 321 GMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIA 366


>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 214

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 289 FTNEGGWLVELLEKKDGNIAAVL 357
           F N G WL EL E  D NI  +L
Sbjct: 98  FDNVGRWLKELREHADSNIVIML 120


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 123 CWLSCLWATTGWNSLGRSTSLGFSTAVAVLSCG 25
           C L C   TTG+ ++  S  +   + VAV+ CG
Sbjct: 172 CLLGC-GVTTGFGAVTHSAKVESGSTVAVVGCG 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,131,744
Number of Sequences: 5004
Number of extensions: 32641
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)