Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0952
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0152 + 20669949-20670326,20670887-20670997,20671079-206712...    29   4.2  
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259...    28   7.3  
12_01_0839 + 7833111-7833380,7833925-7834161                           27   9.7  

>11_06_0152 +
           20669949-20670326,20670887-20670997,20671079-20671280,
           20671393-20671675,20672145-20672234,20672366-20672473,
           20672595-20672975,20673250-20673324,20673685-20673797,
           20676233-20676742,20676807-20677300
          Length = 914

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = -1

Query: 620 INHISTINEKTIIVIVKQKSNATVKLFFT*NNLDMIMFTYIAETEVNNCTDSKMIVS*LL 441
           +NH   +  KT+    K+       L  T   L+ ++F Y  E +V  C D  MI+  ++
Sbjct: 266 VNHFCRV--KTVSSAKKEVILRKTALKSTIGILNSLLFVYDVENQVMICLDVPMIIHAMM 323

Query: 440 LLNVDY 423
           L  V Y
Sbjct: 324 LRKVIY 329


>03_06_0282 -
           32824950-32825135,32825247-32825505,32825651-32825901,
           32826309-32826425,32826613-32826687,32826788-32827009,
           32827396-32827509,32827694-32827801
          Length = 443

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 268 RQMLAMGFTNEGGWLVELLEKKDGNIAAVLDL 363
           ++ +  GF N G W  +L+ +  G + A+ D+
Sbjct: 207 QRFVIQGFGNVGSWAAQLISEAGGKVIAISDV 238


>12_01_0839 + 7833111-7833380,7833925-7834161
          Length = 168

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 386 ILGLTGVSKSSTAAMLPSFFSRSSTSQPPSLV 291
           ++GL+  +K   AA +P   S SST  PPS V
Sbjct: 15  LIGLSPRTKRIMAAKIPDLHSTSSTVVPPSHV 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,332,665
Number of Sequences: 37544
Number of extensions: 201895
Number of successful extensions: 597
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)