Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0952
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52196| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_35265| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_11869| Best HMM Match : Excalibur (HMM E-Value=8)                   28   7.5  
SB_12543| Best HMM Match : TSP_1 (HMM E-Value=1.4e-07)                 28   7.5  

>SB_52196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 21/53 (39%), Positives = 32/53 (60%)
 Frame = +1

Query: 208 AATTDSATIPPR*ATYDEALRQMLAMGFTNEGGWLVELLEKKDGNIAAVLDLL 366
           A  TD A + P     + A+ QM AMGF ++ GWL +L++ K+ +I  VLD +
Sbjct: 374 AEGTDEAPVDP----LEVAIAQMRAMGFEDDSGWLAQLIKSKEYDIGKVLDAI 422


>SB_35265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
 Frame = +1

Query: 454 TIIFESVQLLTSVSAMYVNIIISKLFQVKN----NLTVAFDFCLTITII--VFSLIVEM* 615
           TII  +V ++  V+ + VN+II  +  + N    N+T+  D  + ITII  V ++I++  
Sbjct: 239 TIIIFNVIIIIIVNVIIVNVIIITII-IDNVIIVNVTIIIDNVIIITIIINVITIIIDNV 297

Query: 616 LIF 624
           +IF
Sbjct: 298 IIF 300



 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/58 (31%), Positives = 35/58 (60%)
 Frame = +1

Query: 454 TIIFESVQLLTSVSAMYVNIIISKLFQVKNNLTVAFDFCLTITIIVFSLIVEM*LIFI 627
           TII ++V ++ +V+ +  N+II  +  + N +T+  D  +  TII+   I+ + +IFI
Sbjct: 262 TIIIDNV-IIVNVTIIIDNVIIITI--IINVITIIIDNVIIFTIIINVTIIIVVVIFI 316


>SB_11869| Best HMM Match : Excalibur (HMM E-Value=8)
          Length = 269

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +2

Query: 2   VTIGQLLYPQLNTATAVLKPKEVERPKEFQPVVAQRQDNQQ 124
           V    ++ P  NT T    PK     +E QP+ +    N+Q
Sbjct: 18  VQTSSIVAPNNNTTTQSANPKPASNEQEIQPLASSSTPNEQ 58


>SB_12543| Best HMM Match : TSP_1 (HMM E-Value=1.4e-07)
          Length = 379

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = -3

Query: 123 CWLSCLWATTGWN---SLGRSTSLGFSTAVAVLSCGYRSCP 10
           C + C +  + W+     G+ST   F       SCG RSCP
Sbjct: 89  CPVDCAFGWSQWSPCVGCGKSTQSRFPIVYRQPSCGGRSCP 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,680,752
Number of Sequences: 59808
Number of extensions: 233705
Number of successful extensions: 607
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)