Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0952
(644 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U46752-1|AAC50535.1| 420|Homo sapiens phosphotyrosine independe... 47 5e-05
U46751-1|AAC52070.1| 440|Homo sapiens phosphotyrosine independe... 47 5e-05
U41806-1|AAA93299.1| 440|Homo sapiens p60 protein. 47 5e-05
BC019111-1|AAH19111.1| 440|Homo sapiens sequestosome 1 protein. 47 5e-05
BC017222-1|AAH17222.1| 440|Homo sapiens sequestosome 1 protein. 47 5e-05
BC003139-1|AAH03139.1| 440|Homo sapiens sequestosome 1 protein. 47 5e-05
BC001874-1|AAH01874.1| 356|Homo sapiens SQSTM1 protein protein. 47 5e-05
BC000951-1|AAH00951.1| 368|Homo sapiens Similar to sequestosome... 47 5e-05
Z22642-1|CAA80355.1| 1147|Homo sapiens PO-GA protein. 33 1.1
X69821-1|CAA49475.1| 521|Homo sapiens LLDBP protein. 33 1.1
BC051786-1|AAH51786.1| 1148|Homo sapiens RFC1 protein protein. 33 1.1
BC051751-1|AAH51751.1| 1147|Homo sapiens replication factor C (a... 33 1.1
BC035297-1|AAH35297.1| 1148|Homo sapiens replication factor C (a... 33 1.1
AY600371-1|AAS94325.1| 1147|Homo sapiens replication factor C (a... 33 1.1
AF040250-1|AAB99788.1| 1147|Homo sapiens DNA binding protein pro... 33 1.1
L23320-1|AAA16121.1| 1148|Homo sapiens replication factor C larg... 31 3.5
>U46752-1|AAC50535.1| 420|Homo sapiens phosphotyrosine independent
ligand p62B for the Lck SH2 domain B-cell isoform
protein.
Length = 420
Score = 47.2 bits (107), Expect = 5e-05
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = +1
Query: 259 EALRQMLAMGFTNEGGWLVELLEKKDGNIAAVLDLL 366
E+L QML+MGF++EGGWL LL+ K+ +I A LD +
Sbjct: 376 ESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTI 411
>U46751-1|AAC52070.1| 440|Homo sapiens phosphotyrosine independent
ligand for the Lck SH2 domain p62 protein.
Length = 440
Score = 47.2 bits (107), Expect = 5e-05
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = +1
Query: 259 EALRQMLAMGFTNEGGWLVELLEKKDGNIAAVLDLL 366
E+L QML+MGF++EGGWL LL+ K+ +I A LD +
Sbjct: 396 ESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTI 431
>U41806-1|AAA93299.1| 440|Homo sapiens p60 protein.
Length = 440
Score = 47.2 bits (107), Expect = 5e-05
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = +1
Query: 259 EALRQMLAMGFTNEGGWLVELLEKKDGNIAAVLDLL 366
E+L QML+MGF++EGGWL LL+ K+ +I A LD +
Sbjct: 396 ESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTI 431
>BC019111-1|AAH19111.1| 440|Homo sapiens sequestosome 1 protein.
Length = 440
Score = 47.2 bits (107), Expect = 5e-05
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = +1
Query: 259 EALRQMLAMGFTNEGGWLVELLEKKDGNIAAVLDLL 366
E+L QML+MGF++EGGWL LL+ K+ +I A LD +
Sbjct: 396 ESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTI 431
>BC017222-1|AAH17222.1| 440|Homo sapiens sequestosome 1 protein.
Length = 440
Score = 47.2 bits (107), Expect = 5e-05
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = +1
Query: 259 EALRQMLAMGFTNEGGWLVELLEKKDGNIAAVLDLL 366
E+L QML+MGF++EGGWL LL+ K+ +I A LD +
Sbjct: 396 ESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTI 431
>BC003139-1|AAH03139.1| 440|Homo sapiens sequestosome 1 protein.
Length = 440
Score = 47.2 bits (107), Expect = 5e-05
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = +1
Query: 259 EALRQMLAMGFTNEGGWLVELLEKKDGNIAAVLDLL 366
E+L QML+MGF++EGGWL LL+ K+ +I A LD +
Sbjct: 396 ESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTI 431
>BC001874-1|AAH01874.1| 356|Homo sapiens SQSTM1 protein protein.
Length = 356
Score = 47.2 bits (107), Expect = 5e-05
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = +1
Query: 259 EALRQMLAMGFTNEGGWLVELLEKKDGNIAAVLDLL 366
E+L QML+MGF++EGGWL LL+ K+ +I A LD +
Sbjct: 312 ESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTI 347
>BC000951-1|AAH00951.1| 368|Homo sapiens Similar to sequestosome 1
protein.
Length = 368
Score = 47.2 bits (107), Expect = 5e-05
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = +1
Query: 259 EALRQMLAMGFTNEGGWLVELLEKKDGNIAAVLDLL 366
E+L QML+MGF++EGGWL LL+ K+ +I A LD +
Sbjct: 324 ESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTI 359
>Z22642-1|CAA80355.1| 1147|Homo sapiens PO-GA protein.
Length = 1147
Score = 32.7 bits (71), Expect = 1.1
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +2
Query: 8 IGQLLYPQLNTATAVLKPKEVERPKEFQPVVAQRQDN 118
IG++ P+ ++ A++K KE KE +PV ++R++N
Sbjct: 307 IGEVSSPKASSKLAIMKRKEESSYKEIEPVASKRKEN 343
>X69821-1|CAA49475.1| 521|Homo sapiens LLDBP protein.
Length = 521
Score = 32.7 bits (71), Expect = 1.1
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +2
Query: 8 IGQLLYPQLNTATAVLKPKEVERPKEFQPVVAQRQDN 118
IG++ P+ ++ A++K KE KE +PV ++R++N
Sbjct: 196 IGEVSSPKASSKLAIMKRKEESSYKEIEPVASKRKEN 232
>BC051786-1|AAH51786.1| 1148|Homo sapiens RFC1 protein protein.
Length = 1148
Score = 32.7 bits (71), Expect = 1.1
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +2
Query: 8 IGQLLYPQLNTATAVLKPKEVERPKEFQPVVAQRQDN 118
IG++ P+ ++ A++K KE KE +PV ++R++N
Sbjct: 307 IGEVSSPKASSKLAIMKRKEESSYKEIEPVASKRKEN 343
>BC051751-1|AAH51751.1| 1147|Homo sapiens replication factor C
(activator 1) 1, 145kDa protein.
Length = 1147
Score = 32.7 bits (71), Expect = 1.1
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +2
Query: 8 IGQLLYPQLNTATAVLKPKEVERPKEFQPVVAQRQDN 118
IG++ P+ ++ A++K KE KE +PV ++R++N
Sbjct: 307 IGEVSSPKASSKLAIMKRKEESSYKEIEPVASKRKEN 343
>BC035297-1|AAH35297.1| 1148|Homo sapiens replication factor C
(activator 1) 1, 145kDa protein.
Length = 1148
Score = 32.7 bits (71), Expect = 1.1
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +2
Query: 8 IGQLLYPQLNTATAVLKPKEVERPKEFQPVVAQRQDN 118
IG++ P+ ++ A++K KE KE +PV ++R++N
Sbjct: 307 IGEVSSPKASSKLAIMKRKEESSYKEIEPVASKRKEN 343
>AY600371-1|AAS94325.1| 1147|Homo sapiens replication factor C
(activator 1) 1, 145kDa protein.
Length = 1147
Score = 32.7 bits (71), Expect = 1.1
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +2
Query: 8 IGQLLYPQLNTATAVLKPKEVERPKEFQPVVAQRQDN 118
IG++ P+ ++ A++K KE KE +PV ++R++N
Sbjct: 307 IGEVSSPKASSKLAIMKRKEESSYKEIEPVASKRKEN 343
>AF040250-1|AAB99788.1| 1147|Homo sapiens DNA binding protein
protein.
Length = 1147
Score = 32.7 bits (71), Expect = 1.1
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +2
Query: 8 IGQLLYPQLNTATAVLKPKEVERPKEFQPVVAQRQDN 118
IG++ P+ ++ A++K KE KE +PV ++R++N
Sbjct: 307 IGEVSSPKASSKLAIMKRKEESSYKEIEPVASKRKEN 343
>L23320-1|AAA16121.1| 1148|Homo sapiens replication factor C large
subunit protein.
Length = 1148
Score = 31.1 bits (67), Expect = 3.5
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = +2
Query: 8 IGQLLYPQLNTATAVLKPKEVERPKEFQPVVAQRQDN 118
IG++ P+ ++ A++K K+ KE +PV ++R++N
Sbjct: 307 IGEVSSPKASSKLAIMKRKKESSYKEIEPVASKRKEN 343
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,386,964
Number of Sequences: 237096
Number of extensions: 1125557
Number of successful extensions: 2557
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2557
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7141427170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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