Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0952
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.63 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.63 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.63 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.63 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.4  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              23   3.3  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   7.7  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 1   GHYWTTSVPAT*YRYSCAET*RSGASQGVPTSC 99
           G  +T  VP   Y   C E  +  A +G+P SC
Sbjct: 31  GRIFTICVPEI-YSKECDEMKKDSAVKGIPVSC 62


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 1   GHYWTTSVPAT*YRYSCAET*RSGASQGVPTSC 99
           G  +T  VP   Y   C E  +  A +G+P SC
Sbjct: 31  GRIFTICVPEI-YSKECDEMKKDSAVKGIPVSC 62


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 1   GHYWTTSVPAT*YRYSCAET*RSGASQGVPTSC 99
           G  +T  VP   Y   C E  +  A +G+P SC
Sbjct: 31  GRIFTICVPEI-YSKECDEMKKDSAVKGIPVSC 62


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 304 GWLVELLEKKDGNIAAVLDLLTPVNPKI 387
           G L+      DG  ++++D+ TPVN K+
Sbjct: 915 GELLSSCVSNDGGCSSLVDVSTPVNKKV 942


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +3

Query: 564 LLFNNNYYCFFINSRDVINIHIV 632
           L+   NY C  + ++DV+  H++
Sbjct: 374 LIHAGNYTCHAVRNQDVVQTHVL 396


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 123 CWLSCLWATTG 91
           C+L+C+W  TG
Sbjct: 70  CFLACIWQQTG 80


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 502 YVNIIISKLFQVK 540
           YVN++I K+F +K
Sbjct: 289 YVNLVIVKVFTIK 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,889
Number of Sequences: 438
Number of extensions: 2358
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)