Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0952
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identi...    32   0.28 
At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identi...    31   0.87 
At3g03910.1 68416.m00405 glutamate dehydrogenase, putative simil...    29   2.0  

>At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identical
           to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
           thaliana] SWISS-PROT:Q43314
          Length = 411

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 268 RQMLAMGFTNEGGWLVELLEKKDGNIAAVLDLLTPVNPK 384
           ++ +  GF N G W  +L+ +K G I AV D+   +  K
Sbjct: 207 QRFVIQGFGNVGSWAAKLISEKGGKIVAVSDITGAIKNK 245


>At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identical
           to glutamate dehydrogenase 2 (GDH 2) [Arabidopsis
           thaliana] SWISS-PROT:Q38946
          Length = 411

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +1

Query: 247 ATYDEALRQM--LAMGFTNEGGWLVELLEKKDGNIAAVLDLLTPV-NPK 384
           A Y ++++ +  +  GF N G W  +L+ +K G + AV D+   + NP+
Sbjct: 198 AEYGKSIQGLTFVIQGFGNVGTWAAKLIHEKGGKVVAVSDITGAIRNPE 246


>At3g03910.1 68416.m00405 glutamate dehydrogenase, putative similar
           to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
           thaliana] SWISS-PROT:Q43314
          Length = 411

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 286 GFTNEGGWLVELLEKKDGNIAAVLDL 363
           GF N G W  +L+  K G I AV D+
Sbjct: 213 GFGNVGSWAAKLISDKGGKIVAVSDV 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,903,895
Number of Sequences: 28952
Number of extensions: 163133
Number of successful extensions: 424
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)