Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0951
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    98   1e-21
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    29   0.72 
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    27   1.7  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 97.9 bits (233), Expect = 1e-21
 Identities = 60/131 (45%), Positives = 78/131 (59%), Gaps = 3/131 (2%)
 Frame = +1

Query: 22  ALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERRPHS---SRCVGHHESTGDARR 192
           ALLSV DKTGLL LAK+L+  G++L+ SGGTA    E        S      E  G   +
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62

Query: 193 SGENFTSSGTCWDLSSIIRLCQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVEN 372
           +       G    L+  I   ++D+  Q  E I +VVCNLYPF +T++KP+VT+ +AVE 
Sbjct: 63  TLHPAVHGGI---LARDIPSDEKDLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPEAVEE 119

Query: 373 IDIGGVTLLRA 405
           IDIGGVTLLRA
Sbjct: 120 IDIGGVTLLRA 130



 Score = 65.3 bits (152), Expect = 7e-12
 Identities = 29/41 (70%), Positives = 34/41 (82%)
 Frame = +2

Query: 119 RALRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILAR 241
           + +R +G+ V DVS IT APE+LGGRVKTLHPAVH GILAR
Sbjct: 35  KMIRESGMEVADVSSITNAPEILGGRVKTLHPAVHGGILAR 75



 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = +2

Query: 524 ALKAFTHTSXYDLAISXYFRXXYSPGXAQLT 616
           ALKAF  T+ YD AI+ YFR  Y+ G  QLT
Sbjct: 168 ALKAFASTASYDAAITDYFRKQYAAGVDQLT 198


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 139 PHSSRCVGHHESTGDARRSGENFTSSGTCWDLSSIIRLC 255
           PHS    GH +ST  +  S  N  S GT +D S++   C
Sbjct: 247 PHSHSPAGHQQSTPKSTLSKTNENSEGTLYD-SNVAHGC 284


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 392 VTPPMSMFSTASATVTS-GLDTVWTNGYRLQTT 297
           V PP+S F +AS  V   G   +W NGYR   T
Sbjct: 155 VRPPLSSFQSASDIVRRYGFTALW-NGYRYHLT 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,768
Number of Sequences: 5004
Number of extensions: 37468
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)