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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0951
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   6e-22
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)                      72   4e-13
SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   7.1  
SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)                      27   9.4  
SB_30692| Best HMM Match : REV (HMM E-Value=3.8)                       27   9.4  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score =  101 bits (241), Expect = 6e-22
 Identities = 63/134 (47%), Positives = 78/134 (58%), Gaps = 3/134 (2%)
 Frame = +1

Query: 13  GKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATG---ASERRPHSSRCVGHHESTGD 183
           G LALLSVS+K GL+  AK L + G +L+ASGGTA     A       S   G  E  G 
Sbjct: 33  GSLALLSVSNKKGLVEFAKQLHDLGFRLVASGGTANAIRNAGIPVRDVSEITGAPEMLGG 92

Query: 184 ARRSGENFTSSGTCWDLSSIIRLCQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADA 363
             ++       G    L+ +    + DM +Q +E I VVVCNLYPFV TV+K  V V++A
Sbjct: 93  RVKTLHPAVHGGI---LARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEA 149

Query: 364 VENIDIGGVTLLRA 405
           VE IDIGGVTLLRA
Sbjct: 150 VEQIDIGGVTLLRA 163



 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 34/43 (79%), Positives = 40/43 (93%)
 Frame = +2

Query: 122 ALRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILARLSD 250
           A+RNAG+ V+DVS+IT APEMLGGRVKTLHPAVH GILAR+S+
Sbjct: 69  AIRNAGIPVRDVSEITGAPEMLGGRVKTLHPAVHGGILARVSE 111



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = +2

Query: 509 TKQRLALKAFTHTSXYDLAISXYFRXXYSPGXAQL 613
           T++ LALKAF+HT+ YD+AIS YFR  YS   + +
Sbjct: 199 TRKTLALKAFSHTASYDMAISDYFRKEYSENVSHI 233



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 411 KNHDRXTVVXXPADXDXVVXEIKXNKHXXT 500
           KNH+R TVV  P D + V+ E+  N+   T
Sbjct: 166 KNHERVTVVCDPEDYNKVLSEMTENETCDT 195


>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
          Length = 79

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 34/48 (70%), Positives = 39/48 (81%)
 Frame = +1

Query: 262 DMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 405
           DM +Q +E I VVVCNLYPFV TV+K  V V++AVE IDIGGVTLLRA
Sbjct: 13  DMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 60


>SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 645

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 9   KWKTSSSQRFRQDGSTLVSKEP 74
           +W T  ++R+R+DGS ++  EP
Sbjct: 334 QWHTVVAERYRRDGSLILDSEP 355


>SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 802

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = +1

Query: 16  KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERRPHSSRCVGHHESTGDARRS 195
           K   L+V  +TG  S+ + +        AS G  T  +  RPH  R   +  +  D +  
Sbjct: 211 KSGSLTVDPQTGYYSV-ECMRTTTYGCFASVGVTTATARCRPHHYRYRTNSVNISDKKNV 269

Query: 196 GENFTSSGTCWDL 234
            E   ++G C DL
Sbjct: 270 DECQNNNGGCRDL 282


>SB_30692| Best HMM Match : REV (HMM E-Value=3.8)
          Length = 485

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +2

Query: 110 VPPRALRNAGLTVQDVSDITRAPEMLGGRVKT----LHPAVHAGILARLSDS 253
           +PPR+   A  TV D S     P+  GG+V +    L P V  G++   S S
Sbjct: 166 LPPRSSNEANETVIDTSLTDSPPDAEGGKVTSNEDELVPTVSQGVVEATSPS 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,010,666
Number of Sequences: 59808
Number of extensions: 325084
Number of successful extensions: 847
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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