BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0951 (625 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 6e-22 SB_57127| Best HMM Match : MGS (HMM E-Value=0.25) 72 4e-13 SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 7.1 SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0) 27 9.4 SB_30692| Best HMM Match : REV (HMM E-Value=3.8) 27 9.4 >SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 896 Score = 101 bits (241), Expect = 6e-22 Identities = 63/134 (47%), Positives = 78/134 (58%), Gaps = 3/134 (2%) Frame = +1 Query: 13 GKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATG---ASERRPHSSRCVGHHESTGD 183 G LALLSVS+K GL+ AK L + G +L+ASGGTA A S G E G Sbjct: 33 GSLALLSVSNKKGLVEFAKQLHDLGFRLVASGGTANAIRNAGIPVRDVSEITGAPEMLGG 92 Query: 184 ARRSGENFTSSGTCWDLSSIIRLCQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADA 363 ++ G L+ + + DM +Q +E I VVVCNLYPFV TV+K V V++A Sbjct: 93 RVKTLHPAVHGGI---LARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEA 149 Query: 364 VENIDIGGVTLLRA 405 VE IDIGGVTLLRA Sbjct: 150 VEQIDIGGVTLLRA 163 Score = 75.4 bits (177), Expect = 4e-14 Identities = 34/43 (79%), Positives = 40/43 (93%) Frame = +2 Query: 122 ALRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILARLSD 250 A+RNAG+ V+DVS+IT APEMLGGRVKTLHPAVH GILAR+S+ Sbjct: 69 AIRNAGIPVRDVSEITGAPEMLGGRVKTLHPAVHGGILARVSE 111 Score = 45.2 bits (102), Expect = 4e-05 Identities = 19/35 (54%), Positives = 26/35 (74%) Frame = +2 Query: 509 TKQRLALKAFTHTSXYDLAISXYFRXXYSPGXAQL 613 T++ LALKAF+HT+ YD+AIS YFR YS + + Sbjct: 199 TRKTLALKAFSHTASYDMAISDYFRKEYSENVSHI 233 Score = 29.5 bits (63), Expect = 2.3 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +3 Query: 411 KNHDRXTVVXXPADXDXVVXEIKXNKHXXT 500 KNH+R TVV P D + V+ E+ N+ T Sbjct: 166 KNHERVTVVCDPEDYNKVLSEMTENETCDT 195 >SB_57127| Best HMM Match : MGS (HMM E-Value=0.25) Length = 79 Score = 71.7 bits (168), Expect = 4e-13 Identities = 34/48 (70%), Positives = 39/48 (81%) Frame = +1 Query: 262 DMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 405 DM +Q +E I VVVCNLYPFV TV+K V V++AVE IDIGGVTLLRA Sbjct: 13 DMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 60 >SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0) Length = 645 Score = 27.9 bits (59), Expect = 7.1 Identities = 9/22 (40%), Positives = 16/22 (72%) Frame = +3 Query: 9 KWKTSSSQRFRQDGSTLVSKEP 74 +W T ++R+R+DGS ++ EP Sbjct: 334 QWHTVVAERYRRDGSLILDSEP 355 >SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0) Length = 802 Score = 27.5 bits (58), Expect = 9.4 Identities = 20/73 (27%), Positives = 31/73 (42%) Frame = +1 Query: 16 KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERRPHSSRCVGHHESTGDARRS 195 K L+V +TG S+ + + AS G T + RPH R + + D + Sbjct: 211 KSGSLTVDPQTGYYSV-ECMRTTTYGCFASVGVTTATARCRPHHYRYRTNSVNISDKKNV 269 Query: 196 GENFTSSGTCWDL 234 E ++G C DL Sbjct: 270 DECQNNNGGCRDL 282 >SB_30692| Best HMM Match : REV (HMM E-Value=3.8) Length = 485 Score = 27.5 bits (58), Expect = 9.4 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = +2 Query: 110 VPPRALRNAGLTVQDVSDITRAPEMLGGRVKT----LHPAVHAGILARLSDS 253 +PPR+ A TV D S P+ GG+V + L P V G++ S S Sbjct: 166 LPPRSSNEANETVIDTSLTDSPPDAEGGKVTSNEDELVPTVSQGVVEATSPS 217 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,010,666 Number of Sequences: 59808 Number of extensions: 325084 Number of successful extensions: 847 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 763 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 844 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1548368000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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