Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0951
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protei...    63   1e-10
At1g70130.1 68414.m08070 lectin protein kinase, putative similar...    29   2.5  
At3g48950.1 68416.m05347 glycoside hydrolase family 28 protein /...    28   5.8  
At1g22960.1 68414.m02869 pentatricopeptide (PPR) repeat-containi...    28   5.8  
At5g50335.1 68418.m06234 expressed protein                             27   7.7  

>At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protein
           similar to SP|P12048 Bifunctional purine biosynthesis
           protein purH [Includes:
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam
           profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142:
           MGS-like domain
          Length = 596

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
 Frame = +1

Query: 1   GASNGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERRPHSSRC--VGHHES 174
           G+S  K AL+S+SDK  L SL   L E G  ++++GGTA+         ++   + H   
Sbjct: 67  GSSGEKQALISLSDKRDLASLGNGLQELGYTIVSTGGTASTLENAGVSVTKVEKLTHFPE 126

Query: 175 TGDARRSGENFTSSGTCWDLSSIIRLCQEDMKRQKYEMISVVVCNLYPFVQTVSKPD-VT 351
             D R    +    G       +     E +         VVV NLYPF + V+ P  ++
Sbjct: 127 MLDGRVKTLHPNIHGGILARRDVEHH-MEALNEHGIGTFDVVVVNLYPFYEKVTAPGGIS 185

Query: 352 VADAVENIDIGGVTLLRA 405
             D +ENIDIGG  ++RA
Sbjct: 186 FEDGIENIDIGGPAMIRA 203



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 25/39 (64%), Positives = 29/39 (74%)
 Frame = +2

Query: 125 LRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGILAR 241
           L NAG++V  V  +T  PEML GRVKTLHP +H GILAR
Sbjct: 108 LENAGVSVTKVEKLTHFPEMLDGRVKTLHPNIHGGILAR 146


>At1g70130.1 68414.m08070 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733
          Length = 656

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
 Frame = +1

Query: 10  NGKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTATGASERRPHS--SRCVGHHESTGD 183
           NG ++  S +    ++++ K+++ CGL    S      +     HS  S  VG H +  D
Sbjct: 78  NGTVSSFSTTFVFAIVAVRKTIAGCGLSFNISPTKGLNSVPNIDHSNHSVSVGFHTAKSD 137

Query: 184 ARRSGENFTSSGTCWDLSSIIRLCQEDMKRQKYEMISVVVCNLYP 318
            +  GE+    G   D S + R C     +    ++++ + +  P
Sbjct: 138 -KPDGEDVNLVGINIDSSKMDRNCSAGYYKDDGRLVNLDIASGKP 181


>At3g48950.1 68416.m05347 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15)
           (Pectinase) {Agrobacterium tumefaciens}; contains
           PF00295: Glycosyl hydrolases family 28
          Length = 469

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 18  TSSSQRFRQDGSTLVSKEPVGMWPAVDCQWRYRHGRFGTPASQF 149
           TS    F Q G+T+++ +    WP +     Y  GR GT   +F
Sbjct: 97  TSHFTLFIQRGATILASQDESEWPVIAPLPSYGKGRDGTGTGRF 140


>At1g22960.1 68414.m02869 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 718

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 396 EGHAADVDVLDRVRHGHVRLRYRLDERVQVTDHHAYHLVLLTFHV 262
           +G+A     +  +R G     +RL E +  TDHHA  L +    +
Sbjct: 478 DGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRI 522


>At5g50335.1 68418.m06234 expressed protein
          Length = 74

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 241 IIRLCQEDMKRQKYEMISVVVCN 309
           II+ C+ED + QK +M S+  CN
Sbjct: 14  IIKRCKEDDRHQKKKMQSITNCN 36


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,589,690
Number of Sequences: 28952
Number of extensions: 209476
Number of successful extensions: 620
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)