Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0950
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   1.2  
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha...    26   2.8  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   2.8  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   5.0  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   6.6  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    25   6.6  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    24   8.7  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 239  TRGSRKKLTTNYLNWIVLRQSVIN 310
            T+GS +KLT N+ N++  RQ  IN
Sbjct: 4265 TKGSFEKLTFNFSNFVKYRQYQIN 4288


>SPAC13G7.11 |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 8/17 (47%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
 Frame = +3

Query: 318 QIRIFWRYLY--WWTMR 362
           +IR +WRYL+  WW ++
Sbjct: 73  KIRFWWRYLFYGWWNLK 89


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -1

Query: 213 CSPSHAPLGNPSSRQSWSQAVKSQLRNLIEVLFVFKPSLKMLMF---ITDACIVHKTLTK 43
           CSP +  L   +++ S   A + Q +    + F F P+L+ L     +T+A  V +  TK
Sbjct: 334 CSPENPSLLVNTAKTSKMSARREQFQTNQNLPFCFTPNLEKLTIPYSVTEAANVFQNKTK 393

Query: 42  HSI 34
            ++
Sbjct: 394 RTL 396


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 244  TCFEEIIANALFTIARATWKPKFTAEL 164
            TC E ++  ++  IARA  KP F  ++
Sbjct: 3590 TCTEGLLGPSIMAIARALSKPDFDLDM 3616


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 230 NYRKRIVHHRTRHLETQVHGR 168
           N+ +R  HH +RH E++ HGR
Sbjct: 23  NHSRRHRHHHSRHRESK-HGR 42


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 101 EGLNTNKTSIKLRNCDFTACD 163
           EG N NK+ + L NC    CD
Sbjct: 313 EGANINKSLLALGNCINALCD 333


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 371 FPHSHCPPIQIP 336
           FPHSH PP+  P
Sbjct: 133 FPHSHHPPLHNP 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,700,090
Number of Sequences: 5004
Number of extensions: 32200
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)