Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0950
(432 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0028 + 27782072-27782171,27782427-27782620 34 0.043
11_08_0013 + 27629086-27629185,27629441-27629634 34 0.043
08_02_1156 - 24760332-24761530,24762757-24763648 34 0.057
11_01_0545 + 4308167-4308496 30 0.70
03_02_0141 + 5867591-5867736,5867926-5868010,5868096-5868137,586... 29 1.2
01_01_0559 - 4109690-4111003 28 2.8
11_01_0544 + 4306436-4306762 28 3.7
11_01_0071 + 565349-565814,566626-566692,567255-567288,567747-56... 27 6.5
03_01_0214 + 1694297-1694360,1694396-1694440,1694441-1694622 27 6.5
12_02_1109 + 26151421-26153601 27 8.6
04_01_0530 - 6928528-6929500,6929514-6930964 27 8.6
03_05_0536 - 25357355-25357411,25357463-25357588,25357764-253578... 27 8.6
>11_08_0028 + 27782072-27782171,27782427-27782620
Length = 97
Score = 34.3 bits (75), Expect = 0.043
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +2
Query: 32 SILCFVSVLCTIHASVININIFNEGLNTNKTSIKLRNCDFTACDQLCRELGFPSGACDGE 211
++ F S++ + + + G + + L NCD C C+ GF G CDGE
Sbjct: 11 AVFFFTSLMVMATVNFSSGHTTQGGYGEMDSCMVLVNCDMNKCMSDCQIKGFNGGLCDGE 70
Query: 212 ---QCVCDNFLKT 241
C C + +T
Sbjct: 71 SNDHCCCTDEART 83
>11_08_0013 + 27629086-27629185,27629441-27629634
Length = 97
Score = 34.3 bits (75), Expect = 0.043
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +2
Query: 32 SILCFVSVLCTIHASVININIFNEGLNTNKTSIKLRNCDFTACDQLCRELGFPSGACDGE 211
++ F S++ + + + G + + L NCD C C+ GF G CDGE
Sbjct: 11 AVFFFTSLMVMATVNFSSGHTTQGGYGEMDSCMVLVNCDMNKCMSDCQIKGFNGGLCDGE 70
Query: 212 ---QCVCDNFLKT 241
C C + +T
Sbjct: 71 SNDHCCCTDEART 83
>08_02_1156 - 24760332-24761530,24762757-24763648
Length = 696
Score = 33.9 bits (74), Expect = 0.057
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2
Query: 179 LGFPSGACDGEQCVCDNFLKTRGSRKKLTTNY 274
LG S CDG+Q VCD +L TRG + T Y
Sbjct: 652 LGTTSNRCDGDQIVCD-YLSTRGITDESTRQY 682
>11_01_0545 + 4308167-4308496
Length = 109
Score = 30.3 bits (65), Expect = 0.70
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 110 NTNKTSIKLRNCDFTACDQLCRELGF-PSGAC 202
+T T I + CD T C CR+LG+ P AC
Sbjct: 56 DTYATCIPVAACDDTGCAIRCRDLGYNPGSAC 87
>03_02_0141 +
5867591-5867736,5867926-5868010,5868096-5868137,
5868255-5868423,5868792-5868844,5869022-5869240,
5869507-5869553,5869732-5869786
Length = 271
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 216 HCSPSHAPLGNPSSRQSWSQAVKSQLRN 133
H +PS +P +P+S + W A + LRN
Sbjct: 11 HAAPSSSPSPSPASLRQWRPAAQRNLRN 38
>01_01_0559 - 4109690-4111003
Length = 437
Score = 28.3 bits (60), Expect = 2.8
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -1
Query: 237 LRKLSQTHCSPSHAPLGNPSSRQSWSQAVKSQLRNLIEVLFVFKPSLKMLMFITDACI-V 61
+ +L Q P+ P R SW +Q+ LIE L VFKP+L + D +
Sbjct: 7 VERLGQRRVVPAEPTPAGPL-RLSWLDRYPTQMA-LIESLHVFKPALDRAIGGDDVAVGP 64
Query: 60 HKTLTKHSIDSIVTSYPV 7
+T+ + ++V YP+
Sbjct: 65 ARTIERALARALVHYYPL 82
>11_01_0544 + 4306436-4306762
Length = 108
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 110 NTNKTSIKLRNCDFTACDQLCRELGF-PSG-AC 202
NT T ++ CD T C CR++G P+G AC
Sbjct: 55 NTYSTCFEVSACDDTGCAIRCRDMGHNPAGSAC 87
>11_01_0071 +
565349-565814,566626-566692,567255-567288,567747-567860
Length = 226
Score = 27.1 bits (57), Expect = 6.5
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = -1
Query: 225 SQTHCSPSHAPLGNPSSRQSWSQAVKSQLRNLIEVLFVFKPSLKMLMFITDACIVHKTLT 46
S SPSH P+ PSS + A N I FV ++ +L+ + A ++L
Sbjct: 64 STCSASPSHTPVSKPSSASGETTA-----PNPISARFVV--AIGILLTLAIAAAEERSLV 116
Query: 45 KHSIDSIVT 19
K +I ++ T
Sbjct: 117 KSAISTVYT 125
>03_01_0214 + 1694297-1694360,1694396-1694440,1694441-1694622
Length = 96
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Frame = +2
Query: 158 CDQLCRELGFPSGACDG--EQCVC 223
C +C GFP G C G +C+C
Sbjct: 68 CASVCNTEGFPDGYCHGVRRRCMC 91
>12_02_1109 + 26151421-26153601
Length = 726
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -1
Query: 174 RQSWSQAVKSQLRNLIEVL 118
R+SWS +++QLR+L+ VL
Sbjct: 72 RESWSPKLEAQLRHLLRVL 90
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 289 YNPVEVVGCQFFA*TTCFEEIIANALFTIARAT-WKPKF 176
YNP++ C+ T CF A A+F A +T WK +F
Sbjct: 381 YNPIDQTECRRLCVTDCF---CAVAVFDKASSTCWKKRF 416
>03_05_0536 -
25357355-25357411,25357463-25357588,25357764-25357892,
25358015-25358164,25358253-25358373,25360946-25361247
Length = 294
Score = 26.6 bits (56), Expect = 8.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 382 FCVYFHIRIVHQYRYRQKIRIC 317
FC++ I I+H YR ++ +C
Sbjct: 271 FCMHITIYILHMYRKTDRVTVC 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,475,844
Number of Sequences: 37544
Number of extensions: 195267
Number of successful extensions: 541
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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