Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0950
         (432 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18257| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.71 
SB_45868| Best HMM Match : 7tm_3 (HMM E-Value=0)                       28   2.8  
SB_55898| Best HMM Match : Carb_anhydrase (HMM E-Value=3.6)            27   6.6  
SB_29625| Best HMM Match : zf-AN1 (HMM E-Value=8.4)                    27   6.6  
SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032)             27   8.7  
SB_15899| Best HMM Match : PAN (HMM E-Value=0.00033)                   27   8.7  
SB_38971| Best HMM Match : SRCR (HMM E-Value=0)                        27   8.7  

>SB_18257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 463

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 161 DQLCRELGFPSGACDGEQCVCDNFLKTR--GSRKKLTTNY 274
           D+ C+   F    CDG+ CV DN L  R  GS+KK+  +Y
Sbjct: 371 DKDCKYHAFKGCKCDGKTCV-DNKLVDRGDGSQKKVAVSY 409


>SB_45868| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 604

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 17  EVTMLSILCFVSVLCTIHA 73
           E TML  LCF+S+ CT +A
Sbjct: 476 EGTMLIYLCFISLFCTFYA 494


>SB_55898| Best HMM Match : Carb_anhydrase (HMM E-Value=3.6)
          Length = 531

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = -1

Query: 228 LSQTHCSPSHAPLGNPSSRQSWSQAVKSQLRNLIEVLFVFKPSLKMLMFITDACIVHKTL 49
           +SQT   PSHAP+  P      +   K+ L +  E++F    S +  +   D  ++   +
Sbjct: 1   MSQTDDGPSHAPIVAPLHDFCDNSLAKAYLTD--ELVFTPDDSYESHVTQHDTVVIDSPV 58

Query: 48  TKHSI 34
           T+H +
Sbjct: 59  TQHEV 63


>SB_29625| Best HMM Match : zf-AN1 (HMM E-Value=8.4)
          Length = 126

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +2

Query: 128 IKLRNCDFTACDQLCRELGFPSGACDGEQCVCDNFLKT 241
           +KL   D   C   CRE    S  C GE  +  +F  T
Sbjct: 48  VKLEAADDDGCCTFCREFSKASEICCGEDTLSVHFYST 85


>SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032)
          Length = 807

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 210 SPSHAPLGNPSSRQ--SWSQAVKSQLRNLIEV 121
           SP   PLGNP SR   SW   V  Q+  L+E+
Sbjct: 238 SPGITPLGNPQSRNYPSWKSTV--QVLPLLEI 267


>SB_15899| Best HMM Match : PAN (HMM E-Value=0.00033)
          Length = 234

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 170 CRELGFP-SGACDGEQCVCDNFLKTRGSRKK 259
           C + GF  +GA +G QC CDN     G R +
Sbjct: 2   CADKGFLFAGAQNGGQCFCDNSYGKWGKRSE 32


>SB_38971| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2436

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 137 RNCDFTACDQLCRELGFPSGACDGEQCVCDNFLKTRGS 250
           R  D +    +CR+LGFPS A    +C CD++    G+
Sbjct: 241 RGWDLSEATVVCRQLGFPS-ALSVVKC-CDSYGSGNGT 276



 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 146 DFTACDQLCRELGFPSGACDGEQCVCDNFLKTRGS 250
           D +    +CR+LGFPS A    +C CD++    G+
Sbjct: 795 DLSEATVVCRQLGFPS-ALSAVKC-CDSYGSGNGT 827



 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 137  RNCDFTACDQLCRELGFPSGACDGEQCVCDNFLKTRGS 250
            R  D +    +CR+LGFPS A    +C CD++    G+
Sbjct: 1109 RGWDLSEATVVCRQLGFPS-ALSVVKC-CDSYGSGNGT 1144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,972,221
Number of Sequences: 59808
Number of extensions: 255761
Number of successful extensions: 804
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)