Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0950
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis...    31   0.47 
Z81076-2|CAB03051.3|  333|Caenorhabditis elegans Hypothetical pr...    30   0.82 
AF016686-1|AAB66240.1|  399|Caenorhabditis elegans Hypothetical ...    28   2.5  
AL110485-29|CAB60376.3|  732|Caenorhabditis elegans Hypothetical...    28   3.3  
AC006742-6|AAF60498.1|  778|Caenorhabditis elegans Hypothetical ...    28   3.3  
AC006742-3|AAF60501.1|  778|Caenorhabditis elegans Hypothetical ...    28   3.3  
Z81078-5|CAB03078.2|  722|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z75535-4|CAA99828.2|  722|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U55364-7|AAK68339.1|   80|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta p...    27   5.8  

>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
           transmembrane conductanceregulator homolog protein 1
           protein.
          Length = 1247

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = -3

Query: 238 FEEIIANALFTIARATWKPKFTAELVTSRKVTVTQFN*SLICIQAFIKDVNV 83
           FE+ + N++ TI   +W+P F  +L + R   ++ F    + I +F+  +NV
Sbjct: 267 FEKTVLNSMETIKMFSWEPHFWKKLKSMRGKELSVFR-KTLSINSFMHSLNV 317


>Z81076-2|CAB03051.3|  333|Caenorhabditis elegans Hypothetical
           protein F35C5.2 protein.
          Length = 333

 Score = 29.9 bits (64), Expect = 0.82
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 266 LSVFCVNHVF*GNYRKRIVHHRTRHLETQVH 174
           L +FC+ +V     R+R +HH T H E+Q H
Sbjct: 295 LIIFCIRYV--RRRRQRTIHHITSHKESQDH 323


>AF016686-1|AAB66240.1|  399|Caenorhabditis elegans Hypothetical
           protein R07C3.11 protein.
          Length = 399

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 17/68 (25%), Positives = 35/68 (51%)
 Frame = -1

Query: 264 VSFLREPRVLRKLSQTHCSPSHAPLGNPSSRQSWSQAVKSQLRNLIEVLFVFKPSLKMLM 85
           +S  REP + + +  +  SP   PL       ++++ +    R+L+E LFV +P++ +  
Sbjct: 160 ISIAREP-LDQHIRFSINSPDRVPLYE--EHLAYNKKIHEAQRSLLEKLFVGRPTICVKS 216

Query: 84  FITDACIV 61
              D+C +
Sbjct: 217 LFIDSCFI 224


>AL110485-29|CAB60376.3|  732|Caenorhabditis elegans Hypothetical
           protein Y46G5A.10 protein.
          Length = 732

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 222 QTHCSPSHAPLGNPSSRQSWSQAVKSQLRN 133
           +T CS  H P  NP   +++ Q+ +S  R+
Sbjct: 575 RTPCSDIHIPYNNPEKERAYQQSERSSYRS 604


>AC006742-6|AAF60498.1|  778|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.2 protein.
          Length = 778

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -1

Query: 123 VLFVFKPSLKMLMFITDACIVHKTLTKH-----SIDSIVTSYP 10
           + FVF  ++ M+  +TD C  H+ LTK       I  IV  YP
Sbjct: 578 MFFVFLCAMFMITTVTDICCDHRWLTKRFTCVWKIIKIVEGYP 620


>AC006742-3|AAF60501.1|  778|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.6 protein.
          Length = 778

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -1

Query: 123 VLFVFKPSLKMLMFITDACIVHKTLTKH-----SIDSIVTSYP 10
           + FVF  ++ M+  +TD C  H+ LTK       I  IV  YP
Sbjct: 578 MFFVFLCAMFMITTVTDICCDHRWLTKRFTCVWKIIKIVEGYP 620


>Z81078-5|CAB03078.2|  722|Caenorhabditis elegans Hypothetical
           protein F14B4.1 protein.
          Length = 722

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = +2

Query: 47  VSVLCTIHASVININIFNEGLNTNKTSIKLRNCDFTACDQLCRELGFPSGACDGEQCVCD 226
           ++VL        ++ +F++ L   +TS     C+   CDQLC  LG  +GA     C C 
Sbjct: 556 ITVLAQTALLPYSLKVFHKSLQPEETS----TCETRGCDQLCL-LG-ENGAA---TCACG 606

Query: 227 NFLKTRGSRKKLTTN 271
                    KK ++N
Sbjct: 607 EGFDLLNDGKKCSSN 621


>Z75535-4|CAA99828.2|  722|Caenorhabditis elegans Hypothetical
           protein F14B4.1 protein.
          Length = 722

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = +2

Query: 47  VSVLCTIHASVININIFNEGLNTNKTSIKLRNCDFTACDQLCRELGFPSGACDGEQCVCD 226
           ++VL        ++ +F++ L   +TS     C+   CDQLC  LG  +GA     C C 
Sbjct: 556 ITVLAQTALLPYSLKVFHKSLQPEETS----TCETRGCDQLCL-LG-ENGAA---TCACG 606

Query: 227 NFLKTRGSRKKLTTN 271
                    KK ++N
Sbjct: 607 EGFDLLNDGKKCSSN 621


>Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical
           protein ZK1058.2 protein.
          Length = 809

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +2

Query: 143 CDFTACDQLCRELGFPSGACDGEQCVCDNFLKTRGSRK 256
           C+   C+  C     P     GE C CDNF   R  RK
Sbjct: 541 CNCGRCE--CNPRANPEEQISGEFCECDNFNCPRHDRK 576


>U55364-7|AAK68339.1|   80|Caenorhabditis elegans Hypothetical
           protein F21C10.11a protein.
          Length = 80

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 143 CDFTACDQLCRELGFPSGACDGEQCVCDN 229
           CD+  C+  C E G   G CD   C CD+
Sbjct: 20  CDYY-CEAKCYEDGCNIGECDMFGCFCDD 47


>U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta
           pat-3 protein.
          Length = 809

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +2

Query: 143 CDFTACDQLCRELGFPSGACDGEQCVCDNFLKTRGSRK 256
           C+   C+  C     P     GE C CDNF   R  RK
Sbjct: 541 CNCGRCE--CNPRANPEEQISGEFCECDNFNCPRHDRK 576


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,601,278
Number of Sequences: 27780
Number of extensions: 190372
Number of successful extensions: 580
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)