Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0950
         (432 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20465.1 68415.m02389 expressed protein                             31   0.25 
At2g20070.1 68415.m02345 hypothetical protein weak similarity to...    30   0.78 
At2g02120.1 68415.m00148 plant defensin-fusion protein, putative...    29   1.4  
At3g63360.1 68416.m07131 defensin-related contains weak similari...    28   2.4  
At5g20380.1 68418.m02424 transporter-related low similarity to v...    27   4.1  
At1g30320.1 68414.m03708 remorin family protein contains Pfam do...    27   4.1  
At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24) con...    27   5.5  
At3g12950.1 68416.m01613 expressed protein                             27   5.5  

>At2g20465.1 68415.m02389 expressed protein 
          Length = 89

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 155 ACDQLCRELGFPSGACDG--EQCVCDNFL 235
           +CD  C+ L F SG C G  E+C C +++
Sbjct: 60  SCDLFCKRLKFESGLCTGDLEKCCCIDYI 88


>At2g20070.1 68415.m02345 hypothetical protein weak similarity to
           SP|O61705 Neurotoxin BmK-X precursor (BmK10)
           (Alpha-neurotoxin TX9) {Mesobuthus martensii}
          Length = 89

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +2

Query: 158 CDQLCRELGFPSGA-C-DGEQCVC 223
           C+ LC ELGFP+G  C  G  C C
Sbjct: 52  CNGLCHELGFPAGGYCKPGNTCCC 75


>At2g02120.1 68415.m00148 plant defensin-fusion protein, putative
           (PDF2.1) plant defensin protein family member, personal
           communication, Bart Thomma
           (Bart.Thomma@agr.kuleuven.ac.be); contains a
           gamma-thionin family signature (PDOC00725)
          Length = 77

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = +2

Query: 152 TACDQLCRELGFPSGACDG--EQCVC 223
           T C+ +C   GFP G C G   +C C
Sbjct: 48  TNCENVCHNEGFPGGDCRGFRRRCFC 73


>At3g63360.1 68416.m07131 defensin-related contains weak similarity
           to defensin [Capsicum annuum] gi|1200228|emb|CAA65045
          Length = 85

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +2

Query: 158 CDQLCRELGFPSGAC--DGEQCVCDN 229
           CD LC+  G  SG C  D  +C+C N
Sbjct: 54  CDNLCKYEGAISGVCVSDPHRCLCRN 79


>At5g20380.1 68418.m02424 transporter-related low similarity to
           vesicular glutamate transporter 3 [Rattus norvegicus]
           GI:21685382
          Length = 517

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 31  IYTVFCECFVHYTCIS 78
           IYT FC  + HYTC+S
Sbjct: 323 IYTHFCGSWGHYTCLS 338


>At1g30320.1 68414.m03708 remorin family protein contains Pfam
           domain, PF03763: Remorin, C-terminal region
          Length = 509

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 350 PIQIPPENPNLRHN*SHSDVVQSS 279
           P++I P+N    HN S  D+ QSS
Sbjct: 206 PVRIVPDNAGYEHNKSRMDLCQSS 229


>At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24)
           contains similarity to SKP1 interacting partner 2
           GI:10716949 from [Arabidopsis thaliana]; contains Pfam
           PF00646: F-box domain
          Length = 554

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 209 EQCVCDNFLKTRGSRKK 259
           ++ VCDN  KTRGSR++
Sbjct: 13  KKVVCDNLSKTRGSRRE 29


>At3g12950.1 68416.m01613 expressed protein 
          Length = 558

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +2

Query: 143 CDFTACDQLCRE---LGFPSGACDGEQCV 220
           C  +A  +  RE    GF +G+CDG+ CV
Sbjct: 505 CSASAWPETAREDLVAGFTNGSCDGDLCV 533


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,729,846
Number of Sequences: 28952
Number of extensions: 164196
Number of successful extensions: 481
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)