Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0947
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    24   0.94 
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    22   3.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   5.0  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    21   6.6  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    21   6.6  
DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    21   8.7  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +3

Query: 15  PSGDIPPKTCTMHPSPPPAXRSSGE*RRSXPCAXFXLHXALSDKRVFTPSPAQTPL 182
           P+G IP  + +  P      + S + +   P      H + +   + TPSP+ +PL
Sbjct: 221 PTG-IPTPSTSASPPTVNIKKESPQMQSYRPTGNITPHGSNTSSLITTPSPSASPL 275


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 367 VSTDRIISACLLGTLNS*LSPMSLGLSASV 278
           V  D++    LLG L S L+   L LSA+V
Sbjct: 152 VDEDKVNFVTLLGELKSALNAKGLILSAAV 181


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 15  PSGDIPPKTCTMHPSPP 65
           PSG++PP   T  P PP
Sbjct: 110 PSGNVPP--LTPSPGPP 124


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 237 RPSPCRLPNVCVKCTDADK 293
           R  P  L   C KCTD  K
Sbjct: 64  RVLPDALKTSCAKCTDKQK 82


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 367 VSTDRIISACLLGTLNS*LSPMSLGLSASV 278
           V  D++    LLG L S L+   + LSA+V
Sbjct: 152 VDEDKVNFVTLLGELKSALNAKGMILSAAV 181


>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 246 PCRLPNVCVKCTDADK 293
           P  L N C KC D  K
Sbjct: 63  PDALKNECAKCNDKHK 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,740
Number of Sequences: 336
Number of extensions: 2932
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)