Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0947
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    25   7.1  
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   7.1  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.1  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    25   7.1  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.4  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   9.4  

>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 336 KQADIILSVETTESNAKTYKDIVVPLVSHLIDSLKSKHITDV 461
           K+A+     E   S    +  I  PL+S + D L SKH+ D+
Sbjct: 258 KKAEKRFEEEKERSKNYLFTKIASPLLSVVEDELLSKHLDDL 299


>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 623 APRICRRIHTQS*WWGCYCS 564
           +P    R+H+QS WW  + S
Sbjct: 255 SPTYSNRLHSQSHWWNMFLS 274


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 534 TPTYTSTTRNATITSPPSRLGMNPSTNTRXKSQ 632
           TP  T  + NA +  PPS  G N +TN+   +Q
Sbjct: 82  TPKTTPVSLNAGV--PPSNTGANITTNSNNNAQ 112


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 375 SNAKTYKDIVVPLVSHLIDSLKSKHITDVKVFLVGHTSKY 494
           S AK+ +    P +SH +DS KS   +D+ +    HT+ Y
Sbjct: 201 SRAKSTESTSSPELSHSLDSSKS-IASDMPIHRASHTTGY 239


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 429 DSLKSKHITDVKVFLV-GHTSKYPYPIFMTLTSN*KTPTYTSTTRNATITSPPSRLGMNP 605
           D++ S+  T +   +  G   KYPY        + KTP   +T  + T+TSP S    +P
Sbjct: 544 DTIPSRFKTSISTEVHDGRLKKYPY-------YHVKTPEKGTTVVSRTVTSPKSGAYASP 596

Query: 606 S 608
           S
Sbjct: 597 S 597


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 473 CRTY-LQISISDLYDTDLKLKNAHVHFDDKERYNNIPTIKT 592
           CRT+ L ++I   YD DL LKN  V  D   R + +    T
Sbjct: 695 CRTHRLDLNILFDYDPDLFLKNIPVFVDGLYRVDYLDLFLT 735


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,852
Number of Sequences: 5004
Number of extensions: 46794
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)