Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0947
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0941 - 7423284-7423366,7423479-7423749,7423844-7423913,742...    34   0.11 
03_03_0105 + 14491198-14493636,14494793-14494957,14495647-144957...    29   3.2  
04_04_1397 - 33230416-33230742,33230852-33231007,33231130-332315...    28   5.6  
02_01_0006 - 42752-43816                                               28   5.6  
03_02_0080 + 5498638-5498699,5499121-5499190,5499551-5500711,550...    28   7.4  
07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850...    27   9.7  

>01_01_0941 -
           7423284-7423366,7423479-7423749,7423844-7423913,
           7424034-7424329,7426097-7426642
          Length = 421

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 24/87 (27%), Positives = 42/87 (48%)
 Frame = +3

Query: 336 KQADIILSVETTESNAKTYKDIVVPLVSHLIDSLKSKHITDVKVFLVGHTSKYPYPIFMT 515
           +Q   +   ET +    T+ D V  L++  + +L ++H  +   F V    +Y +     
Sbjct: 303 QQVSFVNGFETLKGG--THVDYVTELITTHLMNLLNEHYEECN-FNVDDVKRYLWVFLNV 359

Query: 516 LTSN*KTPTYTSTTRNATITSPPSRLG 596
           +  N   PT+ S T+  T+T+PP RLG
Sbjct: 360 IIDN---PTFDSQTKE-TLTTPPGRLG 382


>03_03_0105 +
           14491198-14493636,14494793-14494957,14495647-14495760,
           14496223-14496487,14497164-14497237,14497851-14497928
          Length = 1044

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 171 QTPLKICXXL*FRTXNGSSGAXRPSPCRLPNVCVK-CTDADKP 296
           Q P K      FRT +G+S +  PS  R  N+CV    D  +P
Sbjct: 108 QRPSKSFSETTFRTISGASVSANPSSARTGNLCVSLAADVQEP 150


>04_04_1397 -
           33230416-33230742,33230852-33231007,33231130-33231543,
           33234177-33234307,33235076-33235202,33235709-33236209,
           33237624-33237935,33238690-33238719
          Length = 665

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 450 CVYSLDCQSN-VTRAVPRYPCKSLHWIQLSQLIG 352
           CV+   CQ +   R++PR P   L W+Q++   G
Sbjct: 562 CVHQRYCQDDGELRSLPRCPHSHLSWVQITGFFG 595


>02_01_0006 - 42752-43816
          Length = 354

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 18  SGDIPPKTCTMHPSPPP 68
           +GD+P   C  HPS PP
Sbjct: 86  NGDVPSSRCPKHPSQPP 102


>03_02_0080 +
           5498638-5498699,5499121-5499190,5499551-5500711,
           5500940-5501029,5501147-5501464
          Length = 566

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +3

Query: 345 DIILSVETTESNAKTYKDIVVPLVSHLIDSLKSKHITD 458
           D I+ + TT+++    +D+   LVSH IDS+ SK  TD
Sbjct: 138 DSIIVLGTTKAHLPWSEDL--KLVSHCIDSIASKASTD 173


>07_03_1591 +
           27967065-27967090,27967236-27968054,27984940-27985022,
           27985590-27985744,27985956-27986461,27986551-27986703,
           27987146-27987485,27987558-27987822,27987897-27988634,
           27989734-27989779,27989849-27990223,27991511-27991567,
           27991640-27992438
          Length = 1453

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +2

Query: 2   GSGGSERRYSPEDLHDASLPPACDXVXXGITXLXXLCXVHXTXRSXRQACIHAVTGTDAA 181
           G GG+    +PED+  A++  A D    G+T    +C  H    S   AC+  VT     
Sbjct: 256 GEGGAVVLLAPEDIARAAVYLASDEASNGVTEDYLVC-FHNNEPS--NACVTPVTSEGVG 312

Query: 182 KD 187
            D
Sbjct: 313 GD 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,585,695
Number of Sequences: 37544
Number of extensions: 339599
Number of successful extensions: 1058
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)