Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0947
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1) 31 1.1
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_9607| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_56457| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_41403| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_1970| Best HMM Match : DDOST_48kD (HMM E-Value=0) 29 3.3
SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_57199| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 5.7
SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39) 28 7.5
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0) 27 9.9
SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_33079| Best HMM Match : FYVE (HMM E-Value=1.1e-29) 27 9.9
>SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 503 DLYDTDLKLKNAHVHFDDKERYNNIPTIKTGYESFDKYE 619
D YD + K VH+DD E Y N+ Y+ +D Y+
Sbjct: 634 DDYDDNEGSKMVKVHWDDYENYVNVNVNDDDYDDYDDYD 672
>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
Length = 231
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +3
Query: 483 TSKYPYPIFMTLTSN*KTPTYTSTTRNATITSPPSRLGMNPSTNTRXKSQY 635
TS P P + TS TP+YTSTT TS S P+ + Y
Sbjct: 72 TSYTPTPSYTPTTSYTPTPSYTSTTSYTPTTSYTSTTSYTPTPSYTPTPSY 122
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +3
Query: 483 TSKYPYPIFMTLTSN*KTPTYTSTTRNATITSPPSRLGMNPSTNT 617
TS P P + + TS T +YTSTT + TS PS T+T
Sbjct: 138 TSYTPTPSYTSTTSYTSTTSYTSTT---SYTSTPSYTSTTSYTST 179
>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +3
Query: 483 TSKYPYPIFMTLTSN*KTPTYTSTTRNATITSPPSRLGMNPSTNTRXKSQY 635
TS P + + TS TP+YT TT + TS S P+T+ + Y
Sbjct: 36 TSYTSTPSYTSTTSYTPTPSYTCTTSYTSTTSYTSTTSYTPTTSYTPTTSY 86
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +3
Query: 483 TSKYPYPIFMTLTSN*KTPTYTSTTRNATITSPPSRLGMNPSTNTRXKSQY 635
TS P P + TS T +YTSTT TS P+T+ Y
Sbjct: 48 TSYTPTPSYTCTTSYTSTTSYTSTTSYTPTTSYTPTTSYTPTTSYTPTPSY 98
>SB_9607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 288 DKPRDIGDSYEFKVPNKQADIILSVETTESNA-KTYKDIVVPLVSHLIDSLKSK 446
DK + DS+ F P +DIIL VE E K + P+ + DS K K
Sbjct: 10 DKGNETEDSHPFSKPWDDSDIILEVEEQEFYVHKMILKMASPVFKAMFDSEKGK 63
>SB_56457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 324 KVPNKQADIILSVETTESNAKTYKDIVVPLVSHLIDSLKSKHITDVKVFLVGHT 485
+V D++ ET +N + + P +H + L KH D K +GHT
Sbjct: 2 EVEKSPTDVVQEFETLAANEVKKERRIAPGEAHFVWKLIQKHGEDYKAERLGHT 55
>SB_41403| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1415
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +2
Query: 473 CRTY--LQISISDLYDTDLKLKNAHVHFDDKERYNNIPTIKTGYE 601
C Y L +++ ++ ++ K+KN H+++KE++ N I T Y+
Sbjct: 560 CADYYVLGLNLESIFLSEKKMKNHMAHWEEKEQWLNKSVITTPYK 604
>SB_1970| Best HMM Match : DDOST_48kD (HMM E-Value=0)
Length = 415
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -3
Query: 562 FLVVEVYVGVFQFEVSVIKIGYGYL 488
F + +VY GVFQF+V ++GY YL
Sbjct: 297 FKLPDVY-GVFQFKVEYNRVGYSYL 320
>SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1214
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = -3
Query: 478 PTRNTLTSVMCLLFRLSI 425
PTRNT+ S++C+L+ +SI
Sbjct: 912 PTRNTIISIICILWGISI 929
>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 483 TSKYPYPIFMTLTSN*KTPTYTSTTRNATITSPPSRLGMNPSTNT 617
T+ PY T + TP T+T+ NAT T+ P+ P+T T
Sbjct: 128 TTTTPYATTTTPNTTTTTPNTTTTSPNAT-TTTPNTTTTTPNTTT 171
>SB_57199| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 374
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/97 (18%), Positives = 42/97 (43%)
Frame = -3
Query: 550 EVYVGVFQFEVSVIKIGYGYLEVCPTRNTLTSVMCLLFRLSIKCDTSGTTISL*VFALDS 371
++ + +F ++I I G + + T V+C + + T+ + SL A+D
Sbjct: 70 DLIIPIFVAPTNIIDILSGTNRIWLVKGTTGLVLCKVMYFLLDVSTAVSIQSLVAMAIDR 129
Query: 370 VVSTDRIISACLLGTLNS*LSPMSLGLSASVHLTHTF 260
+ + A + + P++ ++A+VH H +
Sbjct: 130 YYAVSHPLKANQSARARALVIPLTWVIAAAVHAPHLY 166
>SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +3
Query: 483 TSKYPYPIFMTLTSN*KTPTYTSTTRNATITSPPSRLGMNPSTNTRXKSQY 635
TS P P + TS T +YTSTT T TS +T+ + Y
Sbjct: 54 TSYTPTPSYTPTTSYTTTTSYTSTTSYTTTTSYTPTTSYTSTTSYTSTTSY 104
>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
Length = 2865
Score = 27.9 bits (59), Expect = 7.5
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Frame = +3
Query: 312 SYEFKV--PNKQADIILSVETTESNAKTYKDIVVPLVSHLIDSLKSKHITDVKV--FLVG 479
SY K N II + T E K ++ + I LKS ++V F +
Sbjct: 1445 SYHLKALEANSSGVIITNGTTAEKTVKINEEYISGYYYTQIGGLKSGTYYHIQVAAFTIA 1504
Query: 480 HTSKYPYPIFMTLTSN*KTPTYTSTTRNATITSP 581
+ TL N PT TST + ITSP
Sbjct: 1505 LGPWSSTRLIKTLGGNDPEPTTTSTMSKSLITSP 1538
>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1918
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 87 PXXTXSQAGGRDASCRSSGEYRRSEPPE 4
P S+A R +SC SSG RR P+
Sbjct: 1888 PSERSSRASSRSSSCSSSGRIRRRPKPK 1915
>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 537 PTYTSTTRNATITSPPSRLGMNPSTNT 617
P T N T+TS P+ L NP+T T
Sbjct: 332 PATEGTKINTTVTSKPAWLTQNPNTTT 358
>SB_33079| Best HMM Match : FYVE (HMM E-Value=1.1e-29)
Length = 212
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = +3
Query: 231 AXRPSPCRLPNVCVKCTDADKPRDIGDSYEFKVPNK 338
A P R+ N C KPR G+ E VPNK
Sbjct: 127 AQSSKPLRVCNSCYNTLSNTKPRAPGEKPEAPVPNK 162
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,641,846
Number of Sequences: 59808
Number of extensions: 375240
Number of successful extensions: 1270
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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