Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0947
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 31 0.93
AC024817-3|AAK68524.1| 482|Caenorhabditis elegans Hypothetical ... 31 0.93
Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z66520-9|CAA91390.2| 335|Caenorhabditis elegans Hypothetical pr... 29 2.1
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 29 2.8
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical pr... 28 5.0
AF067608-15|AAO38679.1| 470|Caenorhabditis elegans Hypothetical... 27 8.7
AF067608-14|AAK95864.1| 551|Caenorhabditis elegans Hypothetical... 27 8.7
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 30.7 bits (66), Expect = 0.93
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +3
Query: 429 DSLKSKHITDVKVFLVGHTSKYPYPIFMTLTSN*KTPTYTSTTRNATITSP 581
D LK+ + VFL HT+ + +F LTS P T+ T +A+ T+P
Sbjct: 44 DELKAFTNEQLNVFLTDHTAPFVDKVFEALTSKSYMPASTAPT-SASATAP 93
>AC024817-3|AAK68524.1| 482|Caenorhabditis elegans Hypothetical
protein Y54G2A.11a protein.
Length = 482
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +3
Query: 294 PRDIGDSYEFKVPNKQADIILSVETTESNAKTYKDIVVPLVSHLIDSLKSKHI 452
PR + Y F+VP D L + +E + +K+ V P + S K KH+
Sbjct: 206 PRPVPSDYLFEVPAFPEDFGLQRQNSEKRSDVWKEFVKPAMRKAPLSDKKKHL 258
>Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical
protein F56H9.6 protein.
Length = 245
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 534 TPTYTSTTRNATITSPPSRLGMNPSTNTRXKS 629
TPT TSTT T T+P + P+T T S
Sbjct: 64 TPTTTSTTSTTTTTTPTTTTTTTPTTTTSTTS 95
>Z66520-9|CAA91390.2| 335|Caenorhabditis elegans Hypothetical
protein F49E12.5a protein.
Length = 335
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = -3
Query: 604 GFIPSLDGGDVIVAFLVVEVYVGVFQFEVSVIKIGYGYLEVCPTRNTLTSVMCLLFRLSI 425
GF P+ D FL V +Y+ VF F + + Y Y E+ + + + V R+S+
Sbjct: 181 GFYPTYSQ-DKFHIFLDVTLYLAVFNFVFDIGLMYYSYQEIL-WKRSYSFVNRFQSRISL 238
Query: 424 KCDTSGTTISL 392
KC + IS+
Sbjct: 239 KCTQAIFIISI 249
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/81 (27%), Positives = 34/81 (41%)
Frame = +3
Query: 366 TTESNAKTYKDIVVPLVSHLIDSLKSKHITDVKVFLVGHTSKYPYPIFMTLTSN*KTPTY 545
TT S T VP+ + ++ S + T V T+ P+ T +PT
Sbjct: 567 TTTSLLTTLTTPTVPVTTTVVPSSATVPTTPPTTVTVAATTTSKAPVVTT------SPTL 620
Query: 546 TSTTRNATITSPPSRLGMNPS 608
T+ TSPPS +G +P+
Sbjct: 621 APTSPTKLPTSPPSTVGTSPT 641
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/81 (27%), Positives = 34/81 (41%)
Frame = +3
Query: 366 TTESNAKTYKDIVVPLVSHLIDSLKSKHITDVKVFLVGHTSKYPYPIFMTLTSN*KTPTY 545
TT S T VP+ + ++ S + T V T+ P+ T +PT
Sbjct: 623 TTTSLLTTLTTPTVPVTTTVVPSSATVPTTPPTTVTVAATTTSKAPVVTT------SPTL 676
Query: 546 TSTTRNATITSPPSRLGMNPS 608
T+ TSPPS +G +P+
Sbjct: 677 APTSPTKLPTSPPSTVGTSPT 697
>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical protein
F22G12.5 protein.
Length = 2396
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 485 LQISISDLYDTDLKLKNAHVHFDDKERYNNIPTIKTGYESFDKYEXQISVSSTT 646
+Q I+ LY L H+H D E +++ TGY SF + SS+T
Sbjct: 1410 IQRRIAMLYAPVLTFALDHLHEFDSEDIDDVDATPTGYRSFPTSGGPLPPSSST 1463
>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical protein
F22G12.5 protein.
Length = 2396
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 485 LQISISDLYDTDLKLKNAHVHFDDKERYNNIPTIKTGYESFDKYEXQISVSSTT 646
+Q I+ LY L H+H D E +++ TGY SF + SS+T
Sbjct: 1410 IQRRIAMLYAPVLTFALDHLHEFDSEDIDDVDATPTGYRSFPTSGGPLPPSSST 1463
>Z84574-6|CAE17784.1| 174|Caenorhabditis elegans Hypothetical
protein F33E2.7 protein.
Length = 174
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 483 TSKYPYPIFMTLTSN*KTPTYTSTTRNATITSPPSRLGMNPSTNTRXKS 629
T+ P T T+ TPT T+TT T T+P + P+T T +S
Sbjct: 91 TTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTT-TTPTTTTTTRS 138
>AF067608-15|AAO38679.1| 470|Caenorhabditis elegans Hypothetical
protein B0511.14b protein.
Length = 470
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 539 HVHFDDKERYNNIPTIKTGYESFDKYEXQISVSSTT 646
H H +E+Y NI I+ G E D+ E + ST+
Sbjct: 337 HYHEKIREKYRNIQKIQEGVEEEDEDEEDDDMPSTS 372
>AF067608-14|AAK95864.1| 551|Caenorhabditis elegans Hypothetical
protein B0511.14a protein.
Length = 551
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 539 HVHFDDKERYNNIPTIKTGYESFDKYEXQISVSSTT 646
H H +E+Y NI I+ G E D+ E + ST+
Sbjct: 337 HYHEKIREKYRNIQKIQEGVEEEDEDEEDDDMPSTS 372
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,594,191
Number of Sequences: 27780
Number of extensions: 274902
Number of successful extensions: 960
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -