Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0947
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76760.1 68414.m08933 thioredoxin family protein similar to t...    29   2.0  
At1g62420.1 68414.m07042 expressed protein contains Pfam profile...    29   2.7  
At5g24230.1 68418.m02851 expressed protein                             29   3.5  
At5g14850.2 68418.m01742 mannosyltransferase, putative similar t...    28   4.7  
At5g14850.1 68418.m01741 mannosyltransferase, putative similar t...    28   4.7  
At5g66680.1 68418.m08406 dolichyl-diphosphooligosaccharide-prote...    27   8.1  
At1g33750.1 68414.m04172 terpene synthase/cyclase family protein...    27   8.1  

>At1g76760.1 68414.m08933 thioredoxin family protein similar to
           thioredoxin CH2, M-type, chloroplast precursor GB:P23400
           SP|P23400 [Chlamydomonas reinhardtii]; contains Pfam
           profile: PF00085 Thioredoxin
          Length = 172

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 405 VPLVSHLIDSLKSKHITDVKVFLVGHTS--KYPYPIFMTLTSN*KTPTYTSTTR 560
           + L S  + SL SK  + V  F     S  K+ +P+    T + K P+ +STTR
Sbjct: 4   ISLSSSTVPSLNSKESSGVSAFASRSISAVKFQFPVRRVRTGDLKFPSLSSTTR 57


>At1g62420.1 68414.m07042 expressed protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 465

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 45  TMHPSPPPAXRSSGE*RRSXPCAXFXLHXALS 140
           T+HPSPPPA ++  +     P A   L  ALS
Sbjct: 286 TVHPSPPPAIKTDEQFLSLLPVAILSLVAALS 317


>At5g24230.1 68418.m02851 expressed protein
          Length = 369

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 544 YVGVFQFEVSVIKIGYGYLEVCPTRNTLTSVM 449
           Y+G F+    + +IG G +E   TRN+L S++
Sbjct: 278 YIGYFKHRNKMFEIGAGKIERIATRNSLRSLL 309


>At5g14850.2 68418.m01742 mannosyltransferase, putative similar to
           PIGB from Homo sapiens [gi:1552169], Mus musculus
           [gi:7634741]
          Length = 529

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 556 VVEVYVGVFQFEVSVIKIGYGYLEVCPTRNTLTSVMCLLFRL 431
           V+ +YVG+ +  ++  K+ +  LEV P  + +    CLL RL
Sbjct: 219 VIWLYVGMLELFLTPNKVKFIILEVIPIGSLVLGFTCLLDRL 260


>At5g14850.1 68418.m01741 mannosyltransferase, putative similar to
           PIGB from Homo sapiens [gi:1552169], Mus musculus
           [gi:7634741]
          Length = 548

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 556 VVEVYVGVFQFEVSVIKIGYGYLEVCPTRNTLTSVMCLLFRL 431
           V+ +YVG+ +  ++  K+ +  LEV P  + +    CLL RL
Sbjct: 219 VIWLYVGMLELFLTPNKVKFIILEVIPIGSLVLGFTCLLDRL 260


>At5g66680.1 68418.m08406 dolichyl-diphosphooligosaccharide-protein
           glycosyltransferase 48kDa subunit family protein similar
           to SP|Q05052 Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase 48 kDa subunit precursor (EC
           2.4.1.119) (Oligosaccharyl transferase 48 kDa subunit)
           {Canis familiaris}; contains Pfam profile PF03345:
           Dolichyl-diphosphooligosaccharide-protein
           glycosyltransferase 48kD subunit
          Length = 437

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -3

Query: 565 AFLVVEVYVGVFQFEVSVIKIGYGYLEV 482
           +F V +VY GVFQF+V   K+GY  L +
Sbjct: 365 SFKVPDVY-GVFQFKVEYEKLGYTTLSL 391


>At1g33750.1 68414.m04172 terpene synthase/cyclase family protein
           similar to DELTA-CADINENE SYNTHASE ISOZYME A GB:Q43714
           from [Gossypium arboreum]
          Length = 603

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/66 (27%), Positives = 26/66 (39%)
 Frame = +3

Query: 261 NVCVKCTDADKPRDIGDSYEFKVPNKQADIILSVETTESNAKTYKDIVVPLVSHLIDSLK 440
           N+CVK        +         P+   D ILSV T  S   T +  +  +   + + L 
Sbjct: 50  NLCVKACSKTSGVESSRPLPHSAPDLWGDHILSVPTENSEFDTLETEIESIKPKVRNMLM 109

Query: 441 SKHITD 458
           S H TD
Sbjct: 110 SSHKTD 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,883,991
Number of Sequences: 28952
Number of extensions: 260684
Number of successful extensions: 783
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)