Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0946
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.08c |||leucine carboxyl methyltransferase |Schizosacchar...    29   0.43 
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    28   0.99 
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    27   1.7  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    27   1.7  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    26   5.3  

>SPBP8B7.08c |||leucine carboxyl methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 310

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 127 PFNLLYIEMRFYPPCINQNSXVDQH 201
           P NL +IE  FYP CI +   +++H
Sbjct: 91  PENLKFIEFDFYPNCIRKIRTIEKH 115


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 107 SGTIFQRYYLGSRQPISLCGNYERAIVFD 21
           S   +Q + +  RQP+S  G +ER +  D
Sbjct: 555 SSNTYQEFLVWKRQPVSFMGRHERLLAID 583


>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 502 SLRAYLVHPQ-CLRHLTTMTSLQ*CGREVHRYCVSQRVATVF*KSIE 639
           S+RA   HPQ  +R + T++SL  C   VH  C+    +T+F +  E
Sbjct: 216 SIRA--THPQHFIRFIHTLSSLIKCTTSVHLICMCSVPSTLFSRDCE 260


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -2

Query: 456 VFTLNEGVMCL*AIL--DPKTPGLKAIFRNYIL 364
           +F+ +E +MC+  IL  DP+ P +KA  R Y++
Sbjct: 249 LFSNDEKLMCVAGILEYDPEFPNIKANHREYLM 281


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 398 GVLGSNMAYRHITPSFSVKTQKSLKRY 478
           GVLG   A R   PS+  KT   +K Y
Sbjct: 109 GVLGHRTAVRDRHPSYKAKTYSLVKEY 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,159
Number of Sequences: 5004
Number of extensions: 51842
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)